| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_2559 |
|---|
| Symbol | |
|---|
| ID | 8253666 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | - |
|---|
| Start bp | 2980251 |
|---|
| End bp | 2982140 |
|---|
| Gene Length | 1890 bp |
|---|
| Protein Length | 629 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 644936209 |
|---|
| Product | RagB/SusD domain protein |
|---|
| Protein accession | YP_003092825 |
|---|
| Protein GI | 255532453 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.615969 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGAAAA AATATATAAC CAAAGGCCTG CTTGTTATCC TTGTTTTAGC AACGCTAAGT
TCCTGTAAAA AGTACCTGGA TGTTGTTCCT GATAATGTGG CTACCATAGA AAATGCCTTC
ACCATGCGCA GTCAGGCGCA AAAATTCTTG TTTACCTGTT ATTCTTATAT GCCTAAAGAA
GGTGACCTTA CCGATGATCC GGGGATTCTT TCCGGTGATG AGATATGGGA TGTTCCTACC
AAAGGTGCTT ACTTTTTTAT CGCCAGAGGC TTTCAAAAAA CGATCAGCCC CTATGGCGAC
AGGTGGACCA ATCTTTACCG TGCATTGCGC GACTGTAATA TTTTTCTTGA AAATGTAGGA
AAAGTACCAG ACCTGAATGA AGAAGAAAGG GCACGCTGGA TTGCAGAGGT GAAATTTTTA
AAAGCCTATT ACCATTTTTA TCTGGTACGC ATGTATGGGC CAATCCCATT GATAAAAACC
AATTTGTCTA TTGATGCAGA AGCAAATGTA ACCAGGGTTA CAAGAGATCC GGTTGATTCC
TGCTTCAGCT ATATCAAGCA ACTGCTTGAT GAAGCCAGTC CCTCACTTCC GCCAATTGTA
CTGAATCCTA CCACCGAGGC CGGACGAATT ACCCAGCCCA TTGCACTGGC GCTTAAAGCC
AAGGTGCTGG TAACAGCTGC AAGTCCGCTT TTTAACGGAA ATACTGATCA GTCGACCCTT
AAAAACCCTG ATGGTACCCA GCTCTTTAAC CCTACCTATT CAAAAGCCAA ATGGGACACT
GCAGCGGTGG CCTGTAAAAA GGCCATAGAA CTGTGCCATT CAGTAGGAAT GAAGTTGTAT
GTATATAATC CAGATTTTCA GCAGTTTAAC CTTACCAGTA CCATTAAAAC GCAAATGAAC
ATCAGGAACA GTTTTGCCGA GAAATGGAAC AGCGAGATCA TCTGGGCAAA CACGCAAACC
CTGGTGGCAA ATGCAACACT GCAGGTTCTG GCTGCCACCT GGTGGGACCC ACTATTGCTT
GACAATTCTG CTATCCGCGG TGAATTCTCT CCGCCTTTAA AAATTGTAGA GCAGTTTTAC
ACCAAAAATG GGGTACCGAT TACCGAAGAT AAAACATGGG ATTACAATGG CAGGTATGGT
TTACGTACTG CGGTTGAAAG CGAAAAGCTG TACATCAAAA AAGACTTTGA GACGGCAAAA
CTGAATTTCG ACAGGGAGCC AAGATTTTAT GCCGATCTGG GCTTTGATGG GGGTATTTGG
TATGGTCAGG GAAAATATGA CGACAGCCAG GACCTGTTTT ATCTGCAGGC TAAATTTAAG
CAAAGAAATG GAGTAGGTAA ACCTAATTAT GGTACAGTAA CAGGATATTA CGTAAAAAAA
TATGTGCATT TCCAAAATGT GATGGTCGCC GCATCCTATT CTACAAATCC ATTTCCATGG
CCGGTAATCC GTTTGTCCGA TCTATACTTG CTGTATTCAG AAGCTTTGAA CGAATCGTTG
GCAGCACCTG ATGCCGAAGT GTACAAATAC ATTAACCTGA TCCGTGCGCG TGCAGGTTTG
AACAGTGTCG AATCATCATG GACCAATTTT TCCAGTAATC CTTCAAAATA TACCAATAAA
GACGGCATGC GAGAAATCAT TCATCAGGAA AGGAAAATAG AGTTTGTATT TGAGTCTCAA
AGGCTTTGGG ATTTGCGCCG CTGGAAAGAG GCAGCTAAAG AGCTGAACCA ACCGATTACC
ACCTGGGACC TGGGGCAGGA AACATCGGCC GGATATTACA GACCGGTGAT CCTGTTTAAC
CAGACATTCG GTTCAAAGGA TTATTTCTGG CCAATTAGTG AAGCCAACAT TACTGCCAAC
AGAAACATCG TCCAGAATTT AGGCTGGTAA
|
|---|
| Protein sequence | MMKKYITKGL LVILVLATLS SCKKYLDVVP DNVATIENAF TMRSQAQKFL FTCYSYMPKE
GDLTDDPGIL SGDEIWDVPT KGAYFFIARG FQKTISPYGD RWTNLYRALR DCNIFLENVG
KVPDLNEEER ARWIAEVKFL KAYYHFYLVR MYGPIPLIKT NLSIDAEANV TRVTRDPVDS
CFSYIKQLLD EASPSLPPIV LNPTTEAGRI TQPIALALKA KVLVTAASPL FNGNTDQSTL
KNPDGTQLFN PTYSKAKWDT AAVACKKAIE LCHSVGMKLY VYNPDFQQFN LTSTIKTQMN
IRNSFAEKWN SEIIWANTQT LVANATLQVL AATWWDPLLL DNSAIRGEFS PPLKIVEQFY
TKNGVPITED KTWDYNGRYG LRTAVESEKL YIKKDFETAK LNFDREPRFY ADLGFDGGIW
YGQGKYDDSQ DLFYLQAKFK QRNGVGKPNY GTVTGYYVKK YVHFQNVMVA ASYSTNPFPW
PVIRLSDLYL LYSEALNESL AAPDAEVYKY INLIRARAGL NSVESSWTNF SSNPSKYTNK
DGMREIIHQE RKIEFVFESQ RLWDLRRWKE AAKELNQPIT TWDLGQETSA GYYRPVILFN
QTFGSKDYFW PISEANITAN RNIVQNLGW
|
|---|
| |