Gene Phep_2416 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_2416 
Symbol 
ID8253523 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand
Start bp2810187 
End bp2810855 
Gene Length669 bp 
Protein Length222 aa 
Translation table11 
GC content42% 
IMG OID644936066 
ProductTonB family protein 
Protein accessionYP_003092682 
Protein GI255532310 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0810] Periplasmic protein TonB, links inner and outer membranes 
TIGRFAM ID[TIGR01352] TonB family C-terminal domain 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.738112 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATTTTAC GTACCACTAT TTTTGTACTT TGCCTGTTGC TTTCGGGCAT TGTAACCTAC 
GCCCAAAAAA CGGATACCAC TTATTATGAT AAAGACTGGG AGCCTTCTAC AAAGGCATTG
GGTTCTTATT TCCGCATTAC CAAAACAATA GAAGAAGGCA AAAGGTATGA GGTTACCGAC
TACTTTAAAT CCGGGAAAAT CCAGATGACT GGTGCTTATA CCTCACTTTC ACCAGAAGTA
AAGGACGGGG AGTTCATCTG GTACGATGAG CAAGGAAAGA AAGAAAAAGA AGCGGTATAT
GTACTGGGAA AGCTTAGGTT TAAAAAAGAC TACAGAGCAG TTCCACCACC AAACGGGGCC
ACTGAGTTCG TTTCTTTAGA AAAACAGCCT GTATATCCGG GAGGGATCAA TAAATTGTAT
AAATACATTG GGGCCAATTT TGTGTACCCC AAAAGCATGT TGAAGTTAAG GCCCAAAGGG
ACCATTAAGG TCAGCTTTCT TATTGAAAAA GACGGCAGTG TATCAGAAGT ATATGTTAAA
GAGTCGGTAC ACCCCTTACT GGATGCTGAA GCCATCCGGG TTATTGAGGG GATGGAAAAA
TGGGAGCCCG GGATACAAAG TGGAAAACCT GTAAGGGTAG CTTATAACAT CCCTATAAAA
ATGAATTGA
 
Protein sequence
MILRTTIFVL CLLLSGIVTY AQKTDTTYYD KDWEPSTKAL GSYFRITKTI EEGKRYEVTD 
YFKSGKIQMT GAYTSLSPEV KDGEFIWYDE QGKKEKEAVY VLGKLRFKKD YRAVPPPNGA
TEFVSLEKQP VYPGGINKLY KYIGANFVYP KSMLKLRPKG TIKVSFLIEK DGSVSEVYVK
ESVHPLLDAE AIRVIEGMEK WEPGIQSGKP VRVAYNIPIK MN