| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_2398 |
|---|
| Symbol | |
|---|
| ID | 8253505 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | - |
|---|
| Start bp | 2790388 |
|---|
| End bp | 2793525 |
|---|
| Gene Length | 3138 bp |
|---|
| Protein Length | 1045 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644936048 |
|---|
| Product | DNA polymerase III, alpha subunit |
|---|
| Protein accession | YP_003092664 |
|---|
| Protein GI | 255532292 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0587] DNA polymerase III, alpha subunit |
|---|
| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc)
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.800911 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGTTATA CTGAATTACA AGTTACCAGC AATTTTAGCT TCCTGCGGGG CGCTTCCCAT
CCTGATGAAA TGGTGGAACA GGCGGCGGCT TATGGCTATT CTAAAATAGC CATAACAGAC
AGGAATACAC TGGCAGGTAT TGTGCGTGCC CATGTTGCTG CTAAAAAGAT CGGAATGTCC
ATTATTCCTG CTTGCCGATT TGACCTGATT GATGGGCCAA GTTTGCTGGC TTATCCGACA
GACAGAGATG CTTACAGCCG TTTATCTGGT TTGCTTACAA CAGGTAACCT GAGGGCTGAA
AAAGGATCTT GCCATTTATA TAAAAAAGAT GTGTATGAAC ATGCCAAAGG CATAAAATTT
ATCGTAGTTC CACCAGCTTC ACTAAATACC AGGTTTGACT TTGAGGAGAG TTTCAAAAAA
GCATTGGCTG AATACCGTGA GGCTTTGGGA TCGGATGTTT ATCTCGGCGC GATGCGTTTG
TATAATGGCG ATGATATGAA ACAGCTTTAC CGGCTGTCGC AGTTGGCTAA GCTGCTGGAT
ATGCCGATGG TGGCCACCAA TGATGTGCAT TATCATGAAC CTAAGCGACG GGAATTACAG
GACATATTAA CCTGTGTCCG TGAAAAATGC ACTATTCAGC ATGCAGGTTT TTTGCTGCAT
CAGCATGCAG AGCGGTACCT GAAACCAATG GAGGAAATGC AGCGTTTGTT CAGGCAGTAT
CCAGATGCCA TCACACGCAC ACAGGAAATT GCCGAAGCCT GCCAGTTTTC CCTTGATAGC
CTGAAATATG TGTATCCCGA AGAAATTACC AGTGATGGCC GCACCCAAAT GGAAGAACTG
ACTTTTTTAG CCTGGCAGGG GGCAAATGAA AAATTTAACC ATGCAATTCC TGAAAAAGTT
GAAGCTACGA TTAAGGCAGA ACTGGCCTTT ATGGAGAAGC GCAACCTTGC GGCTTATTTT
CTGACCGTTC ATGACTTTGT GCGTTTCGCC CGAAGCCAGC GCATCCTGTG CCAGGGACGA
GGCTCGGCGG CCAATTCGGT AGTGTGCTAT TGCCTGGGTA TCACCTCGGT CGATCCTTCT
AAATTCAGGC TGCTGTTTGC GCGTTTTATG TCGGAAGCCA GGGACGAACC GCCTGATATT
GACGTTGACT TTGAGCATGA GCGCCGTGAA GAAGTGATAC AATATATTTA TCAGAAATAT
GGCCGTGAGC GTGCTGCCAT TGTTGCCACT GTAACCCAGC TGCATTTCAA AGGTGCTGTC
AGGGACGTGG CAAAAGCAAT GGGCCTATCC GTAGATATGG TAAACCGTTT GTCGGCTTCC
GTCTGGCGTC ATACAGAAGT ACTGGATGAT CAGCAGCTCA TAGAACAGGG TTTTGATCCC
TCAGACCGGC ATTTACGTAA AACCCTTGAA TTAACCTGTC AAATGATAGG TTTTCCACGC
CAGCTTGGAC AGCATACCGG CGGCTTTGTA ATTACGCAGG GTAAACTGTC GGACCTTTGC
CCGGTGATGA ATGCCCGTAT GGAGGACCGT ACATGCATTG AATGGAACAA GGATGATATA
GATGCGCTCG GTTTTTTGAA AGTGGATGTA CTGGCATTGG GTATGCTGAC CTGCATCCGT
AAAGCGTTTG ATCTGGTTAA GGCGCATTAT GGGCTTGACC TGACTTTAGC CAATGTGCCA
CAGGATGACC CCGCCGTTTA TGAAATGATC AGCCATGCAG ATACCATCGG TGTTTTCCAG
ATCGAAAGCA GGGCACAAAT GTCCATGCTG CCGCGCCTGA AACCCAAATG TTTTTATGAT
CTGGTTATCG AGGTTGCCAT TGTCAGGCCA GGGCCCATAC AGGGTGATAT GGTTCATCCT
TACCTGCGCC GTCGCAACGG CGAGGAGCCG GTGGAATATC CATCAAAGGA ATTGGAAGAA
ATATTGGACA GGACACTCGG TGTGCCTTTG TTTCAGGAGC AGGCGATGGA GATTGCCATC
ATGGCCGGGG GCTTTACTCC GGCAGAAGCA GATGAGCTGC GCCGGAGCAT GGCTAGCTTT
AAAGCAAACG GCAAATTGCA TCTGTATGAA AAAAAACTGG TAGACGGTAT GGTAGCCAGA
GGCTACGAAG AGGGATTTTC GAGGCGGATT TTTAAGCAGT TGCAAGGGTT TGAGGGCTAT
GGTTTCCCTG AAAGCCATGC TGCTTCTTTC GCCTTGCTGG TCTATGTTTC TTCCTGGCTC
AAATGTTATT ATCCTGATGT ATTTGCAACG GCACTGCTGA ATAGTTTGCC AATGGGGTTT
TACCAGCCTG CACAGCTCGT TATTGATGCA CAAAAGCATG GAGTTGAGGT AAAACCTGTA
GATATTAATC TTTCTGGCTG GGATAATTTA CTGGAAGAAA AAGCAGGTAA ATACTGGGTT
GTGCGTTTGG GGTTCCGGCA GGTTTCTGGA TTAAGGGAAG AGGATTTACA GGCATTGATT
GCCGGAAGAT CGGGGGGGTA TTTCTCGGTC AATGCACTGC GCGATGCAGG TGTACCGCAG
GCTGCCCTGG AAAAGCTGGC TGATGCGGAT GCCTTCCGCT CGATAGGTCT TGACCGCAGG
CAGGCCTTGT GGGAAGTGTC TGCCTTGGGT GACAGGCCGG TGGCCTTATT TGAGGGGCAG
CCCTCTGAAA GTGTTACCGA AACGCAGGTA GCCCTTCCGT TTATGACTGC CGGCGAACAT
GTTGTGCAGG ATTACGCAGC GACTTCCTTG TCCCTTAAAG CACATCCAGT TAGTTTTGTA
AGGGAAAAGC TGAAGCTATT GCGGGTATTA TCTGCCCAGG AAATTACCGA AGCTAAGGAT
GGTGACTTTG TAAAAGTAGC TGGATTGATC CTGGTTCGGC AAAGACCGGG CACCGCAAGC
GGTATTTGTT TTATCACTAT AGAAGATGAG AGCGGAACGG TAAACCTGGT TGTATTTCAA
AAGCTTTTTG ATCATTACCG GAAAGAGATA TTGCAGTCTA AACTGATTAT GGTGGAAGGC
CAGCTTCAAA AAGAGGGTGA GGTTATTCAT GTGGTACTCA AACGCTGCTT CAATTTTAAC
AAGTTACTGG GCAATTTAAC CGTCACTGCA ACCGAAGCGC AAACCGATGT TTTCTATAAG
GGAAGGAATT TTAAGTAG
|
|---|
| Protein sequence | MGYTELQVTS NFSFLRGASH PDEMVEQAAA YGYSKIAITD RNTLAGIVRA HVAAKKIGMS
IIPACRFDLI DGPSLLAYPT DRDAYSRLSG LLTTGNLRAE KGSCHLYKKD VYEHAKGIKF
IVVPPASLNT RFDFEESFKK ALAEYREALG SDVYLGAMRL YNGDDMKQLY RLSQLAKLLD
MPMVATNDVH YHEPKRRELQ DILTCVREKC TIQHAGFLLH QHAERYLKPM EEMQRLFRQY
PDAITRTQEI AEACQFSLDS LKYVYPEEIT SDGRTQMEEL TFLAWQGANE KFNHAIPEKV
EATIKAELAF MEKRNLAAYF LTVHDFVRFA RSQRILCQGR GSAANSVVCY CLGITSVDPS
KFRLLFARFM SEARDEPPDI DVDFEHERRE EVIQYIYQKY GRERAAIVAT VTQLHFKGAV
RDVAKAMGLS VDMVNRLSAS VWRHTEVLDD QQLIEQGFDP SDRHLRKTLE LTCQMIGFPR
QLGQHTGGFV ITQGKLSDLC PVMNARMEDR TCIEWNKDDI DALGFLKVDV LALGMLTCIR
KAFDLVKAHY GLDLTLANVP QDDPAVYEMI SHADTIGVFQ IESRAQMSML PRLKPKCFYD
LVIEVAIVRP GPIQGDMVHP YLRRRNGEEP VEYPSKELEE ILDRTLGVPL FQEQAMEIAI
MAGGFTPAEA DELRRSMASF KANGKLHLYE KKLVDGMVAR GYEEGFSRRI FKQLQGFEGY
GFPESHAASF ALLVYVSSWL KCYYPDVFAT ALLNSLPMGF YQPAQLVIDA QKHGVEVKPV
DINLSGWDNL LEEKAGKYWV VRLGFRQVSG LREEDLQALI AGRSGGYFSV NALRDAGVPQ
AALEKLADAD AFRSIGLDRR QALWEVSALG DRPVALFEGQ PSESVTETQV ALPFMTAGEH
VVQDYAATSL SLKAHPVSFV REKLKLLRVL SAQEITEAKD GDFVKVAGLI LVRQRPGTAS
GICFITIEDE SGTVNLVVFQ KLFDHYRKEI LQSKLIMVEG QLQKEGEVIH VVLKRCFNFN
KLLGNLTVTA TEAQTDVFYK GRNFK
|
|---|
| |