Gene Phep_2347 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_2347 
Symbol 
ID8253453 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand
Start bp2741922 
End bp2742821 
Gene Length900 bp 
Protein Length299 aa 
Translation table11 
GC content40% 
IMG OID644935996 
Producthelix-turn-helix- domain containing protein AraC type 
Protein accessionYP_003092613 
Protein GI255532241 
COG category[K] Transcription 
COG ID[COG2207] AraC-type DNA-binding domain-containing proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.482923 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.205256 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCAAGAA GAATAAAGAC CATCAGTGAG TTTCATAAAT TGAGAGGGCT TCCACAACCG 
GAGCATCCCC TGATTAGTGT GATTGATTAC GGTTCGGTTG CTCATGTATC TGAACAAACG
GAAAGTTTTG TGTTTGACTT CTATTCTATT TCTTTGAAAC GGGGGGTGGG AAAAATGCGA
TACGGACAGC AAGAATACGA CTTTGATGGA GGTGTGATGT ATTTTATGGC CCCCGGACAG
GTGCTGACTG TAGAACCCGG ACAAAACTCA AAAGAGCAAC GCTCTGGCTG GATATTGAAA
GTACATCCCG ACCTTTTATG GAATACGCCC CTGGCAAAAA TTATCAGTCA ATACGAGTTT
TTTGATTATT CGGTACACGA GGCTTTGTTT CTGTCAGATA AGGAAGAAGA GATTCTCAAT
GGCATCGTTA CCAATATCAG ACAGGAATAC GGAAACAATA TTGACAAGTT CAGTCATAAT
ATTATTGTTT CGCAGATTGA AACTTTGCTC AATTATGCTG AACGGTTTTA TCAGCGGCAA
TTTATCACCC GAAAAAAATC AGGTCATCAG CTACTCGAAA AAATGGAAGC AGTATTGGAT
AGCTATTTCA ATGATGTTGA TGCGCCAAAA GGATTACCTT CTGTACAATA CGTTTCTGAC
CGGCTGCATG TTTCCAAAGG TTACCTGGCT TCCTTACTCA AATCGCTTAC GGGGTTGAAC
ACCCAGCAGC ATATCCACGA AAAGCTGATA GAGAAAGCAA AGACAAAACT CTCGACAACC
GATCTTTCAG TATCACAAAT AGCTTATGAA CTGGGCTTTG AACACCCGCA AAGTTTTAGC
AAGCTATTTA AGAATAAAAC CAATTTATCA CCTTTGGAAT TTAAGAATTC TTTTAACTGA
 
Protein sequence
MPRRIKTISE FHKLRGLPQP EHPLISVIDY GSVAHVSEQT ESFVFDFYSI SLKRGVGKMR 
YGQQEYDFDG GVMYFMAPGQ VLTVEPGQNS KEQRSGWILK VHPDLLWNTP LAKIISQYEF
FDYSVHEALF LSDKEEEILN GIVTNIRQEY GNNIDKFSHN IIVSQIETLL NYAERFYQRQ
FITRKKSGHQ LLEKMEAVLD SYFNDVDAPK GLPSVQYVSD RLHVSKGYLA SLLKSLTGLN
TQQHIHEKLI EKAKTKLSTT DLSVSQIAYE LGFEHPQSFS KLFKNKTNLS PLEFKNSFN