Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_2347 |
Symbol | |
ID | 8253453 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | - |
Start bp | 2741922 |
End bp | 2742821 |
Gene Length | 900 bp |
Protein Length | 299 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 644935996 |
Product | helix-turn-helix- domain containing protein AraC type |
Protein accession | YP_003092613 |
Protein GI | 255532241 |
COG category | [K] Transcription |
COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.482923 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.205256 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCAAGAA GAATAAAGAC CATCAGTGAG TTTCATAAAT TGAGAGGGCT TCCACAACCG GAGCATCCCC TGATTAGTGT GATTGATTAC GGTTCGGTTG CTCATGTATC TGAACAAACG GAAAGTTTTG TGTTTGACTT CTATTCTATT TCTTTGAAAC GGGGGGTGGG AAAAATGCGA TACGGACAGC AAGAATACGA CTTTGATGGA GGTGTGATGT ATTTTATGGC CCCCGGACAG GTGCTGACTG TAGAACCCGG ACAAAACTCA AAAGAGCAAC GCTCTGGCTG GATATTGAAA GTACATCCCG ACCTTTTATG GAATACGCCC CTGGCAAAAA TTATCAGTCA ATACGAGTTT TTTGATTATT CGGTACACGA GGCTTTGTTT CTGTCAGATA AGGAAGAAGA GATTCTCAAT GGCATCGTTA CCAATATCAG ACAGGAATAC GGAAACAATA TTGACAAGTT CAGTCATAAT ATTATTGTTT CGCAGATTGA AACTTTGCTC AATTATGCTG AACGGTTTTA TCAGCGGCAA TTTATCACCC GAAAAAAATC AGGTCATCAG CTACTCGAAA AAATGGAAGC AGTATTGGAT AGCTATTTCA ATGATGTTGA TGCGCCAAAA GGATTACCTT CTGTACAATA CGTTTCTGAC CGGCTGCATG TTTCCAAAGG TTACCTGGCT TCCTTACTCA AATCGCTTAC GGGGTTGAAC ACCCAGCAGC ATATCCACGA AAAGCTGATA GAGAAAGCAA AGACAAAACT CTCGACAACC GATCTTTCAG TATCACAAAT AGCTTATGAA CTGGGCTTTG AACACCCGCA AAGTTTTAGC AAGCTATTTA AGAATAAAAC CAATTTATCA CCTTTGGAAT TTAAGAATTC TTTTAACTGA
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Protein sequence | MPRRIKTISE FHKLRGLPQP EHPLISVIDY GSVAHVSEQT ESFVFDFYSI SLKRGVGKMR YGQQEYDFDG GVMYFMAPGQ VLTVEPGQNS KEQRSGWILK VHPDLLWNTP LAKIISQYEF FDYSVHEALF LSDKEEEILN GIVTNIRQEY GNNIDKFSHN IIVSQIETLL NYAERFYQRQ FITRKKSGHQ LLEKMEAVLD SYFNDVDAPK GLPSVQYVSD RLHVSKGYLA SLLKSLTGLN TQQHIHEKLI EKAKTKLSTT DLSVSQIAYE LGFEHPQSFS KLFKNKTNLS PLEFKNSFN
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