| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_2316 |
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| Symbol | trmE |
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| ID | 8253422 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | - |
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| Start bp | 2696101 |
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| End bp | 2697471 |
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| Gene Length | 1371 bp |
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| Protein Length | 456 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 644935965 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_003092582 |
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| Protein GI | 255532210 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.64098 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.135497 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGATTACAA ATGAGACTAT AGTTGCTTTG TCTACCCCAC CCGGACTGGG TGCTATAGGA
GTAATCCGCC TTTCGGGAAA AGATGCTATT GCCATTACCA ATTCGGTTTT TAGTGGCAAA
AACTTGCTTG CCCAGGCATC ACATACAATA CATTTTGGTT TAATTAAAGA TGGTGATATC
GTTATAGATG AGGTGCTTGT AAGTTTGTTT GTGGCTCCTA AATCTTATAC TAAAGAAAAT
GTAGTAGAGA TTTCCTGTCA TGGTTCAAAT TATATCATTC AGCAGATCAT TAATTTGCTC
ATCAGAAAAG GGGCTTCAGC AGCTAAGCCA GGGGAATTTA CGTTAAGGGC CTTTTTAAAT
GGAGGACTTG ATCTTTCTCA GGCAGAGGCT GTTGCTGATC TGATATCTTC AGATTCAGCC
GCTGCTCATA GTGTAGCTAT GAACCAGTTA AGGGGTGGTT TTAGCACAGA ATTAAATGTG
CTGAGGGAAC AGCTGATCCA TTTTGCTTCG ATGATTGAAC TTGAGCTTGA TTTTGCTGAA
GAGGATGTTG AGTTTGCCAA CAGGGGGCAG CTACAGGAAC TGATCAATAA AATAACCCTG
GTACTAAATA AGCTGATACG CTCTTTTGAA CTGGGCAATG TTATAAAAAT GGGCATCAAT
ACAGTGATTG CCGGCCGTCC AAATGCAGGT AAATCAACAT TATTAAATGC TCTGTTAAAT
GAAGACAGGG CTATTGTAAG TGAAATTGCC GGTACTACAC GGGATACGAT AGAGGAGGTG
CTTAACATTA ATGGCATCAA TTTCAGACTG ATAGATACAG CAGGTATCCG TGAGGCAACT
GATGCGATTG AGGTTATTGG AGTAGAAAAA ACCATGCAAA AAATTAGTCA GTCGGCTGTA
TTGGTTTATT TGTTTGACGT AGTAAATATT TCTGCTACAG AAGTAAGGGA TGATATTTTA
AGTTTACATA AACCCGGAAT TGCGTTTATT GCCGTTGCAA ACAAAATGGA TCTTTCTTAC
AGCGACCGAC TAAAGGAACT GAAATTGCCT TCTGATATCA GCTTTATTTC TATTTCTGCT
AAGGAGCATC AAAATATTGA AGACTTTAAA CAATTGTTGT ATGAAATTGC AGTAGGAGAT
AAGCTTTCAG ATAACCATAC GATGGTTACC AATATCAGGC ATGTTGAGGC TTTGGAAAAG
ACCCGTGCTG CTTTAAATAA TGTAGCTGAA GGTTTGCGTA ACCCTGTAAC ATCTGATTTT
TTGGCTATGG ATATTAAACA GGCGCTCCAT TATCTAGGGC TCATTACAGG AGTTGTATCT
ACGGATGACC TGTTGGAAAA TATCTTCAGT AAGTTCTGCA TTGGCAAGTA A
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| Protein sequence | MITNETIVAL STPPGLGAIG VIRLSGKDAI AITNSVFSGK NLLAQASHTI HFGLIKDGDI
VIDEVLVSLF VAPKSYTKEN VVEISCHGSN YIIQQIINLL IRKGASAAKP GEFTLRAFLN
GGLDLSQAEA VADLISSDSA AAHSVAMNQL RGGFSTELNV LREQLIHFAS MIELELDFAE
EDVEFANRGQ LQELINKITL VLNKLIRSFE LGNVIKMGIN TVIAGRPNAG KSTLLNALLN
EDRAIVSEIA GTTRDTIEEV LNINGINFRL IDTAGIREAT DAIEVIGVEK TMQKISQSAV
LVYLFDVVNI SATEVRDDIL SLHKPGIAFI AVANKMDLSY SDRLKELKLP SDISFISISA
KEHQNIEDFK QLLYEIAVGD KLSDNHTMVT NIRHVEALEK TRAALNNVAE GLRNPVTSDF
LAMDIKQALH YLGLITGVVS TDDLLENIFS KFCIGK
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