| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_2306 |
|---|
| Symbol | |
|---|
| ID | 8253412 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | - |
|---|
| Start bp | 2684503 |
|---|
| End bp | 2685663 |
|---|
| Gene Length | 1161 bp |
|---|
| Protein Length | 386 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 644935955 |
|---|
| Product | glycosyl hydrolase family 88 |
|---|
| Protein accession | YP_003092572 |
|---|
| Protein GI | 255532200 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4225] Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.375805 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.0432907 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAGA GAATTCTTTT AAACTATTTT AACCTTTGTG CGCTATTTGC TGCCCTTGTC
CTTACCACAA CGCCAAACGT TCCATTATCA GCCTCTCCAA ACGTTACTGG CCGAACTATC
TCAAAAGACA CTTTATTCAA TAAAAAAGCC ACCTTGAAAA TAATGGAGCG CGTGGCAGAT
TGGCAGCTGA ACACCTGGAA TACCAAAGGC TTTAAATTTA AAAAATACGA TTGGACTAAC
GCCACGGGCT ATACTGGGCT CTTCGCGCTT AGCCGGATCA GCAAAAAGCA AGCTTATTCT
AACATGCTGA TCGAGATAGG CAACGAATTG AACTGGAATA CTGGCCCCGA CCGTTTCATG
GCCGATGACT ACTGCATTGC CCAAACGTAT GTGCAGCTTT ATCAAAACTA TAAGGATGAA
AAAATGGTTA AACCATTCAG GGCACTAGCG GATAGCATTG TCGCTGCGCC TTCTTATGAA
TCACTTGAAT GGGCACCTAG AATCAAGTCT CGAGAATGGG CCTGGTGTGA TGCGCTTTTT
ATGGCGCCAA CCTCACTGGC CTACCTGTCG ACCGCTACAA AAGATCCCAG CTACCTCAAT
AAGGCATGTA AATTATGGTG GAAAACCACC GAATTCCTGT ACGACAAAAA TGAACACCTC
TTTTCGAGGG ACAGTCGATT TATCAATAAA GTTGAAAAAA ATGGGAAAAA GGTGTTTTGG
TCCAGAGGCA ATGGATGGGT ATTGGGCGGA TTGGTCCGTA TGCTAGACAA CCTGCCAAAA
AAACATCCAG ATAGGCCTAA ATTTATAAGT CTTTACAAAG AAATGACCAC AAAGATCGCC
TCCATACAAC AGGCTGATGG CAGCTGGAGG ACATCCTTGT TAGATCCGGA CAGCTATCCA
ACTAAAGAAA CCAGTGGAAC GGGCTTTTAT TGTTACGTAA TGGCCTGGGG AATAAATAAC
GGCATGCTCA ACAAAACTGA ATATTTGCCT ATAGTTAAAA AAGCTTGGAT AGCCTTAACC
AGTTCGGTTG AGCCGAATGG CATGTTGGGA AGTGTGCAGC AAATTGCTGG CGCGCCTACT
AACATTGCAG CAAACAGTAC CGAGGTGTAT GCGGTGGGTG CGTTTTTGCT GGCAGGTTCA
GAGCTGTATA AGATTTTTTA A
|
|---|
| Protein sequence | MKKRILLNYF NLCALFAALV LTTTPNVPLS ASPNVTGRTI SKDTLFNKKA TLKIMERVAD
WQLNTWNTKG FKFKKYDWTN ATGYTGLFAL SRISKKQAYS NMLIEIGNEL NWNTGPDRFM
ADDYCIAQTY VQLYQNYKDE KMVKPFRALA DSIVAAPSYE SLEWAPRIKS REWAWCDALF
MAPTSLAYLS TATKDPSYLN KACKLWWKTT EFLYDKNEHL FSRDSRFINK VEKNGKKVFW
SRGNGWVLGG LVRMLDNLPK KHPDRPKFIS LYKEMTTKIA SIQQADGSWR TSLLDPDSYP
TKETSGTGFY CYVMAWGINN GMLNKTEYLP IVKKAWIALT SSVEPNGMLG SVQQIAGAPT
NIAANSTEVY AVGAFLLAGS ELYKIF
|
|---|
| |