| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_2285 |
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| Symbol | |
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| ID | 8253391 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | - |
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| Start bp | 2657225 |
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| End bp | 2657812 |
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| Gene Length | 588 bp |
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| Protein Length | 195 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 644935934 |
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| Product | RNA polymerase sigma factor, sigma-70 family |
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| Protein accession | YP_003092551 |
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| Protein GI | 255532179 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.00116756 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGAGATACA CAGCTGAACA TTCCTTATTG CAACTCGTAT CTTCTGGCAA TGAAGAGGCT
TTTACAATTA TTTATGAACG TTATCGTTTG CGTGTTTATC TTTTTATTAA AAAATATTTA
AAGTCTTCCC AACTCTCTGA TGATATTTGT CAGAATGTTT TTCTAAAAAT CTGGGAAAAT
AAAGAAGAAC TGAGCACCAT CAACTCATTT AATGCCTATG CGTTTACAAT TGCCAAACGC
CAGTGTCTCG ATTTTTTAAA ACGGGCTGCA GTTGAACAAA CGGCCATGAA TTTAATTCTT
CAGGCTTATC CATTAGATAA CAATATCACA GAGGAAAATC AGCAATACAA TGAATATCTC
AATTTTATTG ATAACACTTT ATTGAGATTG CCCCCGCAAA CCCAGGAAGT TTTTAAACTC
TGTAGACAAC AATATAAAAG CTATGATGAG GCGGCCGCAA TTCTGGGCAT ATCCCGGCAT
GCCATAAAAA AACACATGGT AAGGTCGATG AAGGTTTTAC GTACTGCTGC TGAAACGGAA
CTGGGGATTT CAATGAGCAT TCTATTTATC TTATTATCAA GTTTTTAA
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| Protein sequence | MRYTAEHSLL QLVSSGNEEA FTIIYERYRL RVYLFIKKYL KSSQLSDDIC QNVFLKIWEN
KEELSTINSF NAYAFTIAKR QCLDFLKRAA VEQTAMNLIL QAYPLDNNIT EENQQYNEYL
NFIDNTLLRL PPQTQEVFKL CRQQYKSYDE AAAILGISRH AIKKHMVRSM KVLRTAAETE
LGISMSILFI LLSSF
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