| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_2268 |
|---|
| Symbol | |
|---|
| ID | 8253374 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | + |
|---|
| Start bp | 2635411 |
|---|
| End bp | 2636433 |
|---|
| Gene Length | 1023 bp |
|---|
| Protein Length | 340 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 644935917 |
|---|
| Product | periplasmic binding protein/LacI transcriptional regulator |
|---|
| Protein accession | YP_003092534 |
|---|
| Protein GI | 255532162 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1609] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.0455476 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGACTG ATAAACCAAC AACTATTAAG GAAATAGCTA AAATGCTCAA GGTTTCGGTT
TCTACAGTTT CAAGGGCATT AAATGATCAT TCAAGTATAG GTTTAACTAC AAAAATGAGG
GTCAAAAAGC TTGCTGAAGA ACTTAATTAT GAGCCCAATC AGAAAGCAAT ACAATTTCTA
CATGGAAAGT CTTACGTAAT TGGTGTGATT TTGCCGGAGT TATCTGAATC ATTCTTTTCT
GCGGCCATCA GTGGCATTGA AGATATTGCA TACAAAAGAA ATTATACGGT TTTACTGGCG
CAGTCACATG ATGATGCGGA TCGGGAAAAA CTACTTGTGG AAAAAATGAA AACCCAGAGA
GTTGACGGTT TACTTGTTTC GGTATCCAAA ACAACGAGCA CTTATGAACA TTTTGATAAT
TTTAAGAAGT TAAATATCCC TGTTGTTTTT TTTGATCGTG TCCCTCCTGT TAAAGATATA
CATTATGTGG CTTCTAATCT GGAGACCGGT ACTTTTGAAG CAGTGAACTT TCTTTTAAAA
AAAGGGCATC GTTCTATTGG AATGATCAAT GGACCTCAGA CACTTGTGGC AAGTCATGAA
AGGAAAGAAG GTTACATAAG GGCAATGCTA TCTAACCGTT TAAAATTTGA TCCCTCTTTG
ATGATCAGTT GTGATCTGTC TGAAAAAGGA ACTGTTGAGG TAATGGACAG GATGCTGAAC
CATAAGCGTA AACCCACTGC AATTGTTACT TTTAATGATT ACGTTGCCCT GTTCGCTATG
CGCTATGTTA AGTCTCTTAA CCTTCAGCAA ATTGATTTTG TGAGCTATGC AAATCTTCCG
ATCATTAACT ATATGGATTA TATACCTATT GCTTCTGTAG AACAGTTTCC TTATAAACAG
GGTAAAAAGG CGGCAGATAT ATTAATTGAT CTGATCAATA AACCAAAAAA TGAATCGGCA
ACTGAACAGG CCTACTTCCA TATAGTTGTT GAATCCGAAT TGGTTTTAAG TAGTAAGCGG
TAA
|
|---|
| Protein sequence | MMTDKPTTIK EIAKMLKVSV STVSRALNDH SSIGLTTKMR VKKLAEELNY EPNQKAIQFL
HGKSYVIGVI LPELSESFFS AAISGIEDIA YKRNYTVLLA QSHDDADREK LLVEKMKTQR
VDGLLVSVSK TTSTYEHFDN FKKLNIPVVF FDRVPPVKDI HYVASNLETG TFEAVNFLLK
KGHRSIGMIN GPQTLVASHE RKEGYIRAML SNRLKFDPSL MISCDLSEKG TVEVMDRMLN
HKRKPTAIVT FNDYVALFAM RYVKSLNLQQ IDFVSYANLP IINYMDYIPI ASVEQFPYKQ
GKKAADILID LINKPKNESA TEQAYFHIVV ESELVLSSKR
|
|---|
| |