Gene Phep_2260 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_2260 
Symbol 
ID8253366 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand- 
Start bp2628519 
End bp2629118 
Gene Length600 bp 
Protein Length199 aa 
Translation table11 
GC content36% 
IMG OID644935909 
Productregulatory protein TetR 
Protein accessionYP_003092526 
Protein GI255532154 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.535255 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.350629 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGAAGTA AAGAACGTAT CCAAAGGCTT AAAGAAGACA CGAGGGCAAA TATTCTCGAT 
GCAGCCTTAC AAATCGTTAA AGAAGAGGGA TGGCAGGCTT TAAGCATGAG AAAGATTGCA 
GATAAGATAG AATATACTGC CCCGATTATT TATGAATACT TTTTTAATAA AGATGCTATA 
CTGCTGGAGT TAACCCGACA AGGCTATATC ATGCTGGGTG AAAAAATTAA AACCGCTAAA 
AACGAGCACA CAGAAACTGC CAGCCAACTG GAAGCCATGT GGATAGCATA TTGGAACTTT 
GCTTTTGAGT ATAAAGAATT TTATCAGTTG ATGTACGGGG TAGATATGAT CTGTTGCGAA 
CAAAAGAAAT CAATGCCGGA AATAGACTTT TTAGATAACC TGTTCTTTGA TACCATTAAA 
GACCTGATGA AGGCGGAAGA ACCTGATGAA AGCGTAATCT GCAGAAAATA TTATACTTTC 
TGGTCTATTG TTCATGGATT AATTTCTATT AATATGGTCA ATAAAGGCAG AGACGAAGCC 
ATGAACCAAC ATATTTTAAG AGATGCACTC AAAGGAATCA TAAAATATAT AAACGATTAA
 
Protein sequence
MGSKERIQRL KEDTRANILD AALQIVKEEG WQALSMRKIA DKIEYTAPII YEYFFNKDAI 
LLELTRQGYI MLGEKIKTAK NEHTETASQL EAMWIAYWNF AFEYKEFYQL MYGVDMICCE 
QKKSMPEIDF LDNLFFDTIK DLMKAEEPDE SVICRKYYTF WSIVHGLISI NMVNKGRDEA 
MNQHILRDAL KGIIKYIND