| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_2257 |
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| Symbol | |
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| ID | 8253363 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | - |
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| Start bp | 2622579 |
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| End bp | 2623988 |
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| Gene Length | 1410 bp |
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| Protein Length | 469 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 644935906 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT family |
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| Protein accession | YP_003092523 |
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| Protein GI | 255532151 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAATGCAT ATATAAAAAT ATTAGTGATC CTGATCACTA TAAGTATACT TGGGGGATGT
AAGGTATCGA AAGACATACC AGTTCCTAAA ACAGCCATTC CTGAGCATTT CAGAAATGCA
GAGCGCACAG ATTCATTGAG CATAGGTAAT CAGGCTATCG TCGACTTTTT TCCTGAAAAG
GAGCTGAGAA ATCTTATTGA TACAGCTTTG ATAAGAAATT ACGATCTGCA AATTGCGATA
AAGAATATTG AATCAACCAG CCAGTTACTT AAACAGGCTA AACTTGGCAA TCTTCCTCAA
TTGAACCTGC AGATCACAGG TAGTTCAAAT AACCCTTCAA ACAATAGTAT TAATGGGCTG
AGCACCAGTG AGTTTTTAAA GACAAGCCAT ATTGAGGATT TTAATGCCAG CCTGGGGTTA
ACATGGGAAG CTGATATCTG GGGAAAAATA AGAAGCCAGA AACAAGGAGC TTTGGCTACT
TATCTTCAGA CCGAGGAAGC AAGAAAAACC GTACAAACCC AATTGATCGC CAGCATTGCT
CAGGGATATT ACAGGTTATT GATGATGGAT GCACAAATAG GCATTGCCAA GAAGAATCTT
GCTTTAAGTG ATAGCACATT AACTATTGTA AAGTTGCAAT TTGATGCCGG ACAGGTTAGT
TCACTTGCTA TACAGCAAGC GCAGGCACAG CAACTTGTGT CAGCACAACT GATCCCTAAG
CTTCAACAGG ACATAACTAT TCAGGAAAAT GCCTTGAGCA TGCTTACTGG ACGTATCCCC
GGAGCAATTG ATCGCAAAAC AAGTCTGGAC AAAACATTTA TACCCGACAA GCCATCTGCC
GGATATCCTT CTGCGATGGT AAGTAAAAGA CCGGATGTTA AAAGTGCAGA ACTGTCTCTG
GATATTGCCA ATGCCAAAGT AGGGGTAGCA AAGGCAGGTA TGTATCCAAC ATTGAACATT
ACCGCAACTG GAGGAGTAAA TTCATTCAAG GCCAGTAACT GGTTTAATGT TCCGGCTTCA
TTATTTGGCA TGGTTTCAGG CGGACTTACC CAACCGCTAT TACAGAGACG GCAATTGAAA
ACACAGTATG AGATCGCTAA GATAGACAGA GAAAAAACCG TAATTCAGTT TCGTCAGGCT
GTCCTTAATG CAGTTACTGA AGTTTCTGAT GAACTTGTGA AAATAGAAAA ATTAAAATTG
CAGTACGATA TTTCCAGAAA TAGGGTAAAT ACCTTACAGC AAGCCGTTAG AAATGCCAAC
ATGCTATTTA AAAGTGGGAT GGCCACCTAT CTTGAAGTCA TTACGGCCCA AAGTAATTCC
CTGCAAAGCG AACTCGAACT TGCAGCCATT AAAACAGCAC AGCTCAGCGC AACTGTAGAA
CTTTACCGGT CTTTAGGGGG TGGGATATAG
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| Protein sequence | MNAYIKILVI LITISILGGC KVSKDIPVPK TAIPEHFRNA ERTDSLSIGN QAIVDFFPEK
ELRNLIDTAL IRNYDLQIAI KNIESTSQLL KQAKLGNLPQ LNLQITGSSN NPSNNSINGL
STSEFLKTSH IEDFNASLGL TWEADIWGKI RSQKQGALAT YLQTEEARKT VQTQLIASIA
QGYYRLLMMD AQIGIAKKNL ALSDSTLTIV KLQFDAGQVS SLAIQQAQAQ QLVSAQLIPK
LQQDITIQEN ALSMLTGRIP GAIDRKTSLD KTFIPDKPSA GYPSAMVSKR PDVKSAELSL
DIANAKVGVA KAGMYPTLNI TATGGVNSFK ASNWFNVPAS LFGMVSGGLT QPLLQRRQLK
TQYEIAKIDR EKTVIQFRQA VLNAVTEVSD ELVKIEKLKL QYDISRNRVN TLQQAVRNAN
MLFKSGMATY LEVITAQSNS LQSELELAAI KTAQLSATVE LYRSLGGGI
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