| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_2240 |
|---|
| Symbol | |
|---|
| ID | 8253346 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | - |
|---|
| Start bp | 2593149 |
|---|
| End bp | 2594903 |
|---|
| Gene Length | 1755 bp |
|---|
| Protein Length | 584 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644935889 |
|---|
| Product | RagB/SusD domain protein |
|---|
| Protein accession | YP_003092506 |
|---|
| Protein GI | 255532134 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0277051 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAGA TATGCTATTT ACTGACCCTT CTTCTGGCCA TATCGGCCTG TAAAAAATCG
GGTGATTTTC TGGATAACAA AGATGATTCG GCATTTACAG AAGAAAGTGT ATTTGCCGAT
AGTGCGCGTA CCATGGATTT TCTGGCAAGG ATTTATTCAG ATATCCATGC CAGTTATTCC
AAAAGCCGCT GGGACAGCAA GGGAAACCTG GAACAGACCT GCGATGAGGC GGAATACCGC
AATATTGGTG GCACAGAAAA AACCATTGTT GTAGTTTATG CCACCTTTAA TGCCAATAAT
GTTCCTTTTG CAGATGTATG GACTACCGGT TATGCCAACA TCAGGCGGGC CAACATTTAC
CTGCAAAAAG CAGATGGATC ACCTTTATCG GCCGCCCTTA AGGCAAGGAC CAAGGCCGAA
GCCCGCTTTT TAAGGGCCTG GTATTACTTT ATGATGGTGA AAACTTTTGG TGGTATACCC
ATTATAGGTG ATAAAGTATT TGAAGCCAGC GACGAAGTAA ATGTACCTAG AAATACCTAC
GCAGAATCGG TAGACTACCT GATTAAGGAG CTAGACCAGA TTGCAGCTGC CTTGCCACTG
GTTGATGATT ACCCGGAAAG GGATTATGGC AGGGTAACAC GAGGTGCGGC ATTGTCCTTA
AAATCGAGGA TACTGTTATA TGCCGCCAGT CCGCTTTTTA ATGGTGGGGC CATCACTTCA
GACCCGGTAA AAGCAGCCCT GGTAAGTTAT CCTGCGGCCA GCCTGAGTCG CTGGGCAGAT
GCTGCAAAAG CTGCAGAAGA TGTGATCAAC CTGAACCAAT ATGCGCTGAT GAAAGACAAC
AGTACACCAG GTTTAGGTTT CAGCAAGGTA TTTTTAACAC GTGCCCCCAA TCCCGAGTTC
ATCTTTGCCC AGCTAAAGCC GAACAATAAA GACCTTGAAA ATTTCTACAA TCCACCATCA
AGAGGTGGCA ACTGGTATTC ATCGCCTACG CAGAACCTGG TGAACGATTT TGGGACGATC
AATGGGAAAC CGATTGCGAC CGACCTGAAA TCGCCATCCA ACCCACAGGG TTATGATGCA
GCAAACCCAT ACAGCAACCG TGATCCCCGC ATGGGTTATA CCGTTATTTA CAATGGGGCC
CTTTGGTTTA ACAAGACTAC CAACCGGAAA GACCCGGTAT ATACCTTTAT AGGTGCGGGC
GGTACCATGG ACAGCATCTC TATCAAAACG CCGTATTCCG GTTCATCCAC AGGATATTAT
TGCCGTAAAA TGTGTGATGA AAATGTAAGC GCAAATGGTA CAGCTACTAC ACAGAGAGGC
TATGCCATGA TCCGTTATGC AGAGATATTG CTGAATTATG CAGAGGCCAT TAATGAAAGC
GGGCAAACGA GTAAGGCTTA TCCTAAACTT ATTGAGATCC GAGACAGGGC AGGGATAAAA
GCGGGTACTG ATGGCTTGTA CGGCTTAAAA GCGAACATGA GCCAGGAAGA GATGCGCGCG
GTGATACAGA ATGAGAGAAG GGTAGAGCTG GCTTTTGAAG AACACCGTTT CTGGGATGTG
CGCCGCTGGA AGATTGCGGA GCAAACTGAT AATGTGACCA CCCAGGGCAT AAAGATCACC
AAATCGGGCA GTACTTATAC CTATGCGCTT ACACCTGTAC GCAAGCACAA TTTCAGGCCT
GCCATGTATG TATTGCCTAT CCCCCAGACA GAAATTTCGA AAATGCCCGC ACTGATCCAA
AATCCGGGAT GGTAA
|
|---|
| Protein sequence | MKKICYLLTL LLAISACKKS GDFLDNKDDS AFTEESVFAD SARTMDFLAR IYSDIHASYS
KSRWDSKGNL EQTCDEAEYR NIGGTEKTIV VVYATFNANN VPFADVWTTG YANIRRANIY
LQKADGSPLS AALKARTKAE ARFLRAWYYF MMVKTFGGIP IIGDKVFEAS DEVNVPRNTY
AESVDYLIKE LDQIAAALPL VDDYPERDYG RVTRGAALSL KSRILLYAAS PLFNGGAITS
DPVKAALVSY PAASLSRWAD AAKAAEDVIN LNQYALMKDN STPGLGFSKV FLTRAPNPEF
IFAQLKPNNK DLENFYNPPS RGGNWYSSPT QNLVNDFGTI NGKPIATDLK SPSNPQGYDA
ANPYSNRDPR MGYTVIYNGA LWFNKTTNRK DPVYTFIGAG GTMDSISIKT PYSGSSTGYY
CRKMCDENVS ANGTATTQRG YAMIRYAEIL LNYAEAINES GQTSKAYPKL IEIRDRAGIK
AGTDGLYGLK ANMSQEEMRA VIQNERRVEL AFEEHRFWDV RRWKIAEQTD NVTTQGIKIT
KSGSTYTYAL TPVRKHNFRP AMYVLPIPQT EISKMPALIQ NPGW
|
|---|
| |