| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_2204 |
|---|
| Symbol | |
|---|
| ID | 8253310 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | - |
|---|
| Start bp | 2535979 |
|---|
| End bp | 2537664 |
|---|
| Gene Length | 1686 bp |
|---|
| Protein Length | 561 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 644935853 |
|---|
| Product | SSS sodium solute transporter superfamily |
|---|
| Protein accession | YP_003092470 |
|---|
| Protein GI | 255532098 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4146] Predicted symporter |
|---|
| TIGRFAM ID | [TIGR00813] transporter, SSS family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0201601 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACACAC TCCACAAATA CGATTACATC GTATTTCTAG TTTATTTTTT AATAGTATCC
AGCTACGGTT TCTGGATCTA TTATAAAAAG AAATCAGCTG CTGCCGATTC AAAAGATTAT
TTTCTTGCCG AGGGTTCGCT CACCTGGTGG GCCATTGGCG CCTCGCTGAT TGCCTCAAAT
ATCTCTGCCG AACAGATGAT CGGGATGAGT GGCTCCGGAT TTAAACTCGG ACTGGCCATT
TCGGCCTACG AATGGATGGC TGCAGCAACA TTGATCATTG TGGCCGTGTT CTTTATGCCG
GTTTACCTGA AGAACAAGAT CTTTACCATG CCCCAGTTTT TAAGTCAGCG TTACAACGAA
AAAGTAGCCA TGATCATGGC TGTATTCTGG CTCATGCTGT ATATAGTGGT TAACCTGATG
TCTATCCTGT ACCTCGGTGC ACTGGCCATC AGTGGTATAT CCGGGTTAAA CATCACGGCA
TGTATCCTTG GCCTGGCAGT TTTTGCCATC ATCATTACCC TGGGGGGGAT GAAGGTCATC
GGCTATACCG ATGTGATCCA GGTATTCTTC CTGGTACTGG GCGGTTTGGT AGCCACTTAT
ATTGCCCTCA ACCTGATCTC AGGTCAGCAG GGTATCGTAA AAGGCTTTGC CATCCTCACC
GATGGGGCCT CCGAGCATTT CCACCTCATC TTTAAAAAGG ACGATCCCAA TTATATGGAC
CTTCCGGGAC TCAGCGTATT GATTGGTGGT ATGTGGATTG CCAACCTGAG CTATTGGGGC
TGTAACCAGT ACATTACCCA AAGGGCACTG GGTGCATCCC TGCCCGTTGC CAGATCAGGC
CTTTTGTTTG CCGCCTTCCT TAAAATGCTG ATGCCGGTTA TTGTTGTTAT CCCAGGTATA
GCGGTATATT ATATCATTAA AGAGAAAATC CCGGGTATCA GCGGCAGCGA TCTGCTTACC
TCTTCAGGTG TACAGGATCC CAACAAAGCG TATCCGGCCT TACTGGGCTT ATTGCCCATC
GGTTTAAAAG GTTTGTCATT TGCCGCCTTA ACCGCTGCCA TCGTTGCTTC CCTTGCCGGA
AAAGCCAACA GCATTGCCAC TATATTTACA TTAGATATCT ATAAAAAAGC CTTCAATACC
AATGCTGGGG AAGGTACATT GGTCAACGTA GGGAAAATTA CGGTAATCGT ATCCATGCTG
CTGGCCGTAG TGCTTTCATT AATTGTTGGT GATGCCTTAA TGGGCGAGGG TAAACAGGGC
TTCCAGTACA TTCAGGAATA CACAGGTTTT GTGTCTCCGG GTATTTTTGC CATGTTCATC
CTGGGCTTTT TCTGGAAAAA GACCACTTCA AACGCAGCCT TATTTGCCAC GGTAGGCGGC
TTTATTGTTT CCGTGCTCCT TAAGTTCCTG CCGGGATGGG TAGATCTTTC CTTCTTACAT
GAATACGGAT GGGCAGTAGC CAATTCTGCA GGTGTATTTG AAATGCCATT TATGGACAGG
ATGCTGATCG TATTTGCCGT ATGTGTAATC GGTATGTATT TCATCAGTAT CTATGAAAAC
AGAAACGGCA TCATCCCTAA CGGACTGGAA GTAGATCCGA AAATGTTTCG CGTTTCCACT
TCATTTGCAG TAGGGGCATT GATTATTGTG GCCATGCTGG TGGCACTTTA TTCTGCCTTC
TGGTAA
|
|---|
| Protein sequence | MNTLHKYDYI VFLVYFLIVS SYGFWIYYKK KSAAADSKDY FLAEGSLTWW AIGASLIASN
ISAEQMIGMS GSGFKLGLAI SAYEWMAAAT LIIVAVFFMP VYLKNKIFTM PQFLSQRYNE
KVAMIMAVFW LMLYIVVNLM SILYLGALAI SGISGLNITA CILGLAVFAI IITLGGMKVI
GYTDVIQVFF LVLGGLVATY IALNLISGQQ GIVKGFAILT DGASEHFHLI FKKDDPNYMD
LPGLSVLIGG MWIANLSYWG CNQYITQRAL GASLPVARSG LLFAAFLKML MPVIVVIPGI
AVYYIIKEKI PGISGSDLLT SSGVQDPNKA YPALLGLLPI GLKGLSFAAL TAAIVASLAG
KANSIATIFT LDIYKKAFNT NAGEGTLVNV GKITVIVSML LAVVLSLIVG DALMGEGKQG
FQYIQEYTGF VSPGIFAMFI LGFFWKKTTS NAALFATVGG FIVSVLLKFL PGWVDLSFLH
EYGWAVANSA GVFEMPFMDR MLIVFAVCVI GMYFISIYEN RNGIIPNGLE VDPKMFRVST
SFAVGALIIV AMLVALYSAF W
|
|---|
| |