Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_2192 |
Symbol | |
ID | 8253298 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | + |
Start bp | 2521798 |
End bp | 2524182 |
Gene Length | 2385 bp |
Protein Length | 794 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 644935841 |
Product | penicillin-binding protein 1C |
Protein accession | YP_003092458 |
Protein GI | 255532086 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG4953] Membrane carboxypeptidase/penicillin-binding protein PbpC |
TIGRFAM ID | [TIGR02073] penicillin-binding protein 1C |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTATTAA AGGAACAAAA AACCATCCTT TTTACAGATG TATGCTGCCT GGCACTGCTG CTGGTATTTC TGTTGTCGCT GCCTTCAAAG CTGTTCCGGT CGCCCAGCTC CTATGTGCTG GAAGCTTCGA ACGGGGAATT GCTGAGTGCA GCTATTGCCA GGGACGGACA ATGGCGTTTT CCGGTAGCGG ATAGTGTTCC GGAGAAGTTT GCACAATGTA TTGTCGCTTT TGAGGACAAG CGTTTTTATC AGCATCCGGG GATCGATATT TTAGCGATGG GCAGGGCCAT GCGCCAGAAT TTTAAGGCCC GTACTGTGGT AAGTGGAGGC AGTACGCTGA CTATGCAGGT GATCCGCCTG TCGCGGCGGG AAAGCCGTAC CATAGGCCAG AAGCTGATTG AAATGGTGCT GGCCCTGAGA CTGGAACTGG GACATTCTAA AAATGACATT TTAAAACTAT ATGCGGCCAA TGCACCCTTT GGGAGCAATG TTGTAGGGCT GGAAGCGGCT TCATGGCGTT ACTTTGGGCG TGGGCCGGAG GCTTTGTCAT GGGGTGAAAT GGCTACGCTG GCCGTATTGC CAAACAGCCC CGCGCTGGTC CATCCCGGTA AAAATTCGGC CAGGCTCATC AAAAAACGGA ACGATCTGCT GGATAAGCTG GCTGTATTGG GGACCATAGA CCAGGCTACG GCCAATTTAT CCAAGCTGGA GCCTATTCCT GGTAAGCCAC AGGCCCTGCC GCAATATGCC CCTCACCTGC TGAACCGCTT TAAAAGCGAG CAGGCATCCT TAAAAAATAA AGGAACAAGG ATCAGCTCTA CGCTGGATTA CGATTTGCAG CTGAAGTTAA ACGCCCTGCT TAAGCGCTAC AACAACCGTT ACCGGGCCAA CGACATCAAT AACATTGCTG CCCTGGTGCT GGATGTGAAA AAAGGTACCG TACTGAGTTA TGTGGGGAAT ATCTATCAGC CTGAAAATAA GGAACTGGAA AGCCATGTGG ACATGATCAG GGCGGCAAGG AGTCCGGGTA GCACCTTAAA ACCCCTGCTG TATGCCAGTA TGCTGAACGA TGGGTTCATT TTACCGCGTA CCCTGATACC GGATGTTCCC ACCCAGATTG GGGGCTATTC GCCCCAGAAT TACGATTTGG GTTATGACGG AGCTATTCCG GCCGACAGGG CCCTGAGCCG TTCCTTAAAT ATCCCTGCGG TGAAAATGCT GCAGACCTAT AAATACCAGC GTTTTTACGA TAAGCTGAAA AAACTGGGTT TCAGTACCTT GAACCGGCCG GCCGACCATT ATGGCCTTTC GCTGATCCTG GGGGGCAGTG AGGTAACGAT GTGGGACCTG GCCAGGACAT ATATGGGCAT GGCCCGTACC TTAAATCATT TTAACGATTA TAAAGGCCGG TATAACCCCC ATGATTACGA TGAACCGCTT TATATAAATG CCAGGCGGGA TACGCGGTAT GATGGTGATG AAACGCAGGT AAACTCGGTG TTCGACCATG GTTCGGTCTG GAATGCCTTT AATGCCATGG AAGAACTGAT GCGCCCTGGT GAAGAAGGTT TGTGGGAACA GTTTTCGTCT TCGCAGCGGC TGGCCTGGAA AACCGGGACA AGTTTTGGTT TCAGGGATGC CTGGGCGGTT GGGCTAAACC CGGATTATGT GGTGTGTGTA TGGGTGGGCA ATGCCGATGG TGAAGGCCGC CCGGGCCTTA CAGGGATTGA TGCGGCAGCA CCGGTACTGT TTGATATTTT TAAGCAGCTG CCGGCAGGAA AATGGTTCCG GACACCTAAA AACAAATTAA AAAAGATGCG TGTATGCCGG CAAAGCGGTT ATAAGGCCGG CGAATATTGT GGGGATGTAC TGGAAGAACT GGTTTCCCCG GCGGGAGAAA AAACAGTGCT TTGCCCCTAC CATAAGCTGG TACACCTGGA CAGGACAGGT ACCTACAGGG TAACAGATGC CTGTGAAGCA CCTGCTGAGA TGCAACACAG GGCCTGGTTT ATATTGCCAC CGGCAATGGA ATACTATTAT AAGATCAAGA ACAGCGATTA TAAAGTGCTG CCCCCCTTTA AGCCGGGTTG CGGGGATGTG GGCAGCAATT ATGTGATGGA GATGATCTAT CCGAAGAACA ATGCCAGCAT TTATGTGCCA CTGGAGCTGG ATGGGAGCCG CGGTAAAGTG GTGCTGAATG CGACCCACCG GGATGCGGAC ATAAAGATTT ACTGGCATAT AGACGGAGCA TATGTGGCCA CTACAAAAAA CTATCACCAG CTGGCGGTGA GTCCGGCGCC CGGAAAACAT ACCCTGACCC TGGTAGATGA AAACGGGGAA AGGCTGGTGC AGACTTTTAC CATTCTGGAT AAGGAGAAAA ACTAA
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Protein sequence | MLLKEQKTIL FTDVCCLALL LVFLLSLPSK LFRSPSSYVL EASNGELLSA AIARDGQWRF PVADSVPEKF AQCIVAFEDK RFYQHPGIDI LAMGRAMRQN FKARTVVSGG STLTMQVIRL SRRESRTIGQ KLIEMVLALR LELGHSKNDI LKLYAANAPF GSNVVGLEAA SWRYFGRGPE ALSWGEMATL AVLPNSPALV HPGKNSARLI KKRNDLLDKL AVLGTIDQAT ANLSKLEPIP GKPQALPQYA PHLLNRFKSE QASLKNKGTR ISSTLDYDLQ LKLNALLKRY NNRYRANDIN NIAALVLDVK KGTVLSYVGN IYQPENKELE SHVDMIRAAR SPGSTLKPLL YASMLNDGFI LPRTLIPDVP TQIGGYSPQN YDLGYDGAIP ADRALSRSLN IPAVKMLQTY KYQRFYDKLK KLGFSTLNRP ADHYGLSLIL GGSEVTMWDL ARTYMGMART LNHFNDYKGR YNPHDYDEPL YINARRDTRY DGDETQVNSV FDHGSVWNAF NAMEELMRPG EEGLWEQFSS SQRLAWKTGT SFGFRDAWAV GLNPDYVVCV WVGNADGEGR PGLTGIDAAA PVLFDIFKQL PAGKWFRTPK NKLKKMRVCR QSGYKAGEYC GDVLEELVSP AGEKTVLCPY HKLVHLDRTG TYRVTDACEA PAEMQHRAWF ILPPAMEYYY KIKNSDYKVL PPFKPGCGDV GSNYVMEMIY PKNNASIYVP LELDGSRGKV VLNATHRDAD IKIYWHIDGA YVATTKNYHQ LAVSPAPGKH TLTLVDENGE RLVQTFTILD KEKN
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