| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_2184 |
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| Symbol | mnmA |
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| ID | 8253290 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | + |
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| Start bp | 2508406 |
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| End bp | 2509497 |
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| Gene Length | 1092 bp |
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| Protein Length | 363 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 644935833 |
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| Product | tRNA-specific 2-thiouridylase MnmA |
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| Protein accession | YP_003092450 |
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| Protein GI | 255532078 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0482] Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain |
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| TIGRFAM ID | [TIGR00420] tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.414855 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 0.985413 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTAAAA AAGGCAGAAT ATTGGTAGCC ATGAGTGGCG GGGTCGACAG TTCGGTAGCA
GCAGTAATGC TCCATGAACA AGGTTATGAA GTCATTGGTT TAACCATGAA AACCTGGGAT
TATGCCACCT CAGGAAGCAG TAGCAAAGAA ACCGGCTGCT GCAGTCTCGA CAGCATCAAC
GATGCCCGTA CCCTTGCGGT AAACTACGGC TTCCCCCATT ATATATTAGA CATCAGGGAC
GAGTTTGGCG ATTTCGTGAT CGATAACTTT GTAGACGAAT ACCTTGCCGG CCGTACCCCT
AACCCATGTG TATTGTGTAA TACCCATATC AAATGGGAAG CCCTGTTAAA ACGTGCCAAC
AAGCTCGATT GCGAATTTAT CGCGACCGGG CATTATGCCA ATATCCGTCA GCAGGACAGC
GGAAGGTATG TCATTTCCAA AGGAAAAGAC GAAAATAAAG ACCAGTCTTA CGTACTCTGG
GGTGTATCCC AGGAAAACCT GTCAAGAACC CAGTTCCCAT TAGGTTCCTT TGCCAAATCA
GAGATCAGAC AAATGGCCCT GGATATGGGA CAGGAAGAAC TGGCTAAAAA AAGCGAAAGC
TACGAGATCT GCTTTGTACC GGATAACGAT TACCGGGCCT TTTTAAAACA CAAAGTGGAA
GACCTGGAGC AGCGCGTTGC CGGTGGTAAT TTCATTACCA GCAACGGAAT GGTGGTTGGT
CAGCATAAAG GTTATCCTTT TTATACAATC GGACAAAGAA AAGGTCTTGG TATCGCCTTT
GGCGAACCCA TGTTTGTGAC CCAGATCCTG CCCGAAAGCA ATACTGTAGT ATTGGGCAGG
GCCGATGAAC TGGAACGTAA AGAAGCCATG GTCAGGAACC TCAATCTGGT GAAATACGAA
AGTATACATG AACCAATGGA TAACGTGGTT ACCAAAATCC GATATAAAGA TGCAGGTATG
CTGAGTACCA TTGTACAGGA AAAAGACAAA ATGCGTGTGG TCTTCGATCA CAATGTATCG
GCTATAGCAC CCGGACAATC CGCAGTTTTC TATGAGGGGA ACGACCTGTT AGGCGGCGGT
TTCCTTTGCT AA
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| Protein sequence | MSKKGRILVA MSGGVDSSVA AVMLHEQGYE VIGLTMKTWD YATSGSSSKE TGCCSLDSIN
DARTLAVNYG FPHYILDIRD EFGDFVIDNF VDEYLAGRTP NPCVLCNTHI KWEALLKRAN
KLDCEFIATG HYANIRQQDS GRYVISKGKD ENKDQSYVLW GVSQENLSRT QFPLGSFAKS
EIRQMALDMG QEELAKKSES YEICFVPDND YRAFLKHKVE DLEQRVAGGN FITSNGMVVG
QHKGYPFYTI GQRKGLGIAF GEPMFVTQIL PESNTVVLGR ADELERKEAM VRNLNLVKYE
SIHEPMDNVV TKIRYKDAGM LSTIVQEKDK MRVVFDHNVS AIAPGQSAVF YEGNDLLGGG
FLC
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