Gene Phep_2064 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_2064 
Symbol 
ID8253168 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand
Start bp2380995 
End bp2383184 
Gene Length2190 bp 
Protein Length729 aa 
Translation table11 
GC content42% 
IMG OID644935712 
ProductATP-dependent DNA helicase RecQ 
Protein accessionYP_003092331 
Protein GI255531959 
COG category[L] Replication, recombination and repair 
COG ID[COG0514] Superfamily II DNA helicase 
TIGRFAM ID[TIGR00614] ATP-dependent DNA helicase, RecQ family
[TIGR01389] ATP-dependent DNA helicase RecQ 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.256854 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.150426 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATGTGA AAAAGTCGTT GTTTGACAAC TTACAAACCT TTTTTGGTTT TGATAATTTT 
AAAGGTGACC AGGAGTCAAT AATTACCAAT GTTCTTGAAA AGAAGAACAC TTTTGTTATT
ATGCCTACAG GTGGGGGGAA ATCCATATGT TACCAGTTAC CAGCATTGAT CAATGAAGGG
ACCGCAATTG TGATTTCCCC ATTGATAGCA TTGATGAAAA ATCAGGTAGA TCAGCTACGG
GCTTTTGGTG GGAGTGATAG TATAGCACAT TTTTTAAATT CCTCTTTAAA CAAGACGGAG
ATTACACAGG TAAAAAGTGA TTTATTGAAC GGACAGACCA AGCTGCTTTA TGTGGCCCCA
GAGTCGCTTT CCAAACAGGA TAACATTGAT TTCCTGAAAC TCATCAAAAT ATCTTTTGTA
GCAGTAGATG AAGCCCACTG TATTTCGGAG TGGGGACATG ATTTCAGGCC TGAATACCGA
AAGATCAGGC AGGTGATCAG CGGTTTGGGT GAAGGGATCC CTATTATTGC CTTAACTGCA
ACAGCAACAC CTAAAGTTCA GCAGGACATC ATAAAAAACC TGGGCATGAG TGACGCCACT
TTATTTAAGT CGTCCTTTAA CAGGCCCAAT CTGTTTTATG AGATCAGGCC CAAGCGTGAT
GTGCTGAAAG AGATTATCCG TTATATTAAG TACAATACCG GAAAATCCGG TATTATTTAT
TGCCTGAGCC GTAAAAAGGT GGAGGAAGTA GCTGAATCTT TAAACCTGAA CGGTATAAAG
GCCCTGCCTT ACCATGCAGG CCTGGAACCC AAGGTGAGGG CAGAGACCCA GGATAAATTC
CTGATGGAGG ATGTAGAAGT GATTGTAGCC ACCATTGCAT TTGGAATGGG AATAGACAAG
CCAGATGTGC GTTTTGTGAT CCACCATGAT ATTCCCAAAA GCATGGAAGG ATATTATCAG
GAAACAGGAA GGGCAGGCAG AGATGGCGGA GAAGGTGTTT GTATAGCTTT TTATGCGCAG
AAGGATGTGG ATAAACTGGC TAAGTTTATG AAGGATAAAC CCGTTTCGGA AAGGGAAATT
GGTACACAGA TATTGAAAGA AGTAATTGAT TATGCTGAAT CCGGCGTTTG CCGAAGGAAG
CAGATCCTGC ATTATTTTGG GGAGAACTTT AACGAAACCG GCTGTAACTG CATGTGCGAC
AATTGCAAAA AGCCCAAAAA GCTTTTTGAA GCTGAGGAAT CTTTATTGGT GCTCTTAAAA
CTGATTAAAA AAATCGGGGA AAAGTTTGAT GATGCGCACA TCATTAATGT GCTGATGGGG
CTGGAAACGG CGCAGACCAT TGCTTATGAG CACAGCAAGC TGCCGGAATT TGGATTGGGT
GTGGTGGAAG GAGAAAACCA CTGGAAATCT CTGGTACGGC AGGCAGTGCT GAATAATTTC
CTGTCCAAGG ACATAGACAA TTACGGGCTG CTGGGACTTA CCAATTCGGG ACGTGATTTT
ATTGAAAACC CCTACAACCT TAAATTCATA CTCAATGAGC CGATAGACAG TGCTGCCGAC
GATGATGAGG ATGATGTAAA ACATGGTACC GGAACTTTGG ATACGCAGCT GCTGCAGCTG
TTGAAAGACC TGCGCAAAAA AATAGCCAAA CAAAAAAATG TTCCTCCGTT TGTGGTTTTC
CAGGATCCGT CACTGGAAGA GATGTGTACG CATTATCCCA TTGCGATGGA TGAACTGAAG
CAGATCTCTG GCGTGGGTAA CGGTAAGGCC TTAAAATTTG GAGCCCCTTT TCTGGAGCTG
ATCAAAAAAT ATGTGGAAGA CAATGACATT GAACGGCCAA TAGACCTGAT CATTAAAACC
CAGGCCAATA AATCGCAGCT CAAAGTTTCA ATCATTCAGA ATATAGACAG GAAAATTGGT
CTGGAAGACA TTGCCAGGGC AAAAGGGATT ACTTATGATG ATATTTTAAA GGAAATTGAA
GCAATAGTAA ATTCCGGTAC TAAGCTGAAC CTCAATTATT TTGTAGATGA AATGATAGAT
GAAGATCGTC AGGATGAGGT ATTTGATTAT TTTCAATCAG CTGAAAATGA CTCCATTGAT
GAAGCCCTGA AAGAATTGGG CGAAACAGAT TATTCGCGTG AAGAAATCCA GCTGATGCGC
ATTAAATTCA TGTCCGAATT AGGTAATTAA
 
Protein sequence
MDVKKSLFDN LQTFFGFDNF KGDQESIITN VLEKKNTFVI MPTGGGKSIC YQLPALINEG 
TAIVISPLIA LMKNQVDQLR AFGGSDSIAH FLNSSLNKTE ITQVKSDLLN GQTKLLYVAP
ESLSKQDNID FLKLIKISFV AVDEAHCISE WGHDFRPEYR KIRQVISGLG EGIPIIALTA
TATPKVQQDI IKNLGMSDAT LFKSSFNRPN LFYEIRPKRD VLKEIIRYIK YNTGKSGIIY
CLSRKKVEEV AESLNLNGIK ALPYHAGLEP KVRAETQDKF LMEDVEVIVA TIAFGMGIDK
PDVRFVIHHD IPKSMEGYYQ ETGRAGRDGG EGVCIAFYAQ KDVDKLAKFM KDKPVSEREI
GTQILKEVID YAESGVCRRK QILHYFGENF NETGCNCMCD NCKKPKKLFE AEESLLVLLK
LIKKIGEKFD DAHIINVLMG LETAQTIAYE HSKLPEFGLG VVEGENHWKS LVRQAVLNNF
LSKDIDNYGL LGLTNSGRDF IENPYNLKFI LNEPIDSAAD DDEDDVKHGT GTLDTQLLQL
LKDLRKKIAK QKNVPPFVVF QDPSLEEMCT HYPIAMDELK QISGVGNGKA LKFGAPFLEL
IKKYVEDNDI ERPIDLIIKT QANKSQLKVS IIQNIDRKIG LEDIARAKGI TYDDILKEIE
AIVNSGTKLN LNYFVDEMID EDRQDEVFDY FQSAENDSID EALKELGETD YSREEIQLMR
IKFMSELGN