Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_2064 |
Symbol | |
ID | 8253168 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | + |
Start bp | 2380995 |
End bp | 2383184 |
Gene Length | 2190 bp |
Protein Length | 729 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 644935712 |
Product | ATP-dependent DNA helicase RecQ |
Protein accession | YP_003092331 |
Protein GI | 255531959 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0514] Superfamily II DNA helicase |
TIGRFAM ID | [TIGR00614] ATP-dependent DNA helicase, RecQ family [TIGR01389] ATP-dependent DNA helicase RecQ |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.256854 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.150426 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATGTGA AAAAGTCGTT GTTTGACAAC TTACAAACCT TTTTTGGTTT TGATAATTTT AAAGGTGACC AGGAGTCAAT AATTACCAAT GTTCTTGAAA AGAAGAACAC TTTTGTTATT ATGCCTACAG GTGGGGGGAA ATCCATATGT TACCAGTTAC CAGCATTGAT CAATGAAGGG ACCGCAATTG TGATTTCCCC ATTGATAGCA TTGATGAAAA ATCAGGTAGA TCAGCTACGG GCTTTTGGTG GGAGTGATAG TATAGCACAT TTTTTAAATT CCTCTTTAAA CAAGACGGAG ATTACACAGG TAAAAAGTGA TTTATTGAAC GGACAGACCA AGCTGCTTTA TGTGGCCCCA GAGTCGCTTT CCAAACAGGA TAACATTGAT TTCCTGAAAC TCATCAAAAT ATCTTTTGTA GCAGTAGATG AAGCCCACTG TATTTCGGAG TGGGGACATG ATTTCAGGCC TGAATACCGA AAGATCAGGC AGGTGATCAG CGGTTTGGGT GAAGGGATCC CTATTATTGC CTTAACTGCA ACAGCAACAC CTAAAGTTCA GCAGGACATC ATAAAAAACC TGGGCATGAG TGACGCCACT TTATTTAAGT CGTCCTTTAA CAGGCCCAAT CTGTTTTATG AGATCAGGCC CAAGCGTGAT GTGCTGAAAG AGATTATCCG TTATATTAAG TACAATACCG GAAAATCCGG TATTATTTAT TGCCTGAGCC GTAAAAAGGT GGAGGAAGTA GCTGAATCTT TAAACCTGAA CGGTATAAAG GCCCTGCCTT ACCATGCAGG CCTGGAACCC AAGGTGAGGG CAGAGACCCA GGATAAATTC CTGATGGAGG ATGTAGAAGT GATTGTAGCC ACCATTGCAT TTGGAATGGG AATAGACAAG CCAGATGTGC GTTTTGTGAT CCACCATGAT ATTCCCAAAA GCATGGAAGG ATATTATCAG GAAACAGGAA GGGCAGGCAG AGATGGCGGA GAAGGTGTTT GTATAGCTTT TTATGCGCAG AAGGATGTGG ATAAACTGGC TAAGTTTATG AAGGATAAAC CCGTTTCGGA AAGGGAAATT GGTACACAGA TATTGAAAGA AGTAATTGAT TATGCTGAAT CCGGCGTTTG CCGAAGGAAG CAGATCCTGC ATTATTTTGG GGAGAACTTT AACGAAACCG GCTGTAACTG CATGTGCGAC AATTGCAAAA AGCCCAAAAA GCTTTTTGAA GCTGAGGAAT CTTTATTGGT GCTCTTAAAA CTGATTAAAA AAATCGGGGA AAAGTTTGAT GATGCGCACA TCATTAATGT GCTGATGGGG CTGGAAACGG CGCAGACCAT TGCTTATGAG CACAGCAAGC TGCCGGAATT TGGATTGGGT GTGGTGGAAG GAGAAAACCA CTGGAAATCT CTGGTACGGC AGGCAGTGCT GAATAATTTC CTGTCCAAGG ACATAGACAA TTACGGGCTG CTGGGACTTA CCAATTCGGG ACGTGATTTT ATTGAAAACC CCTACAACCT TAAATTCATA CTCAATGAGC CGATAGACAG TGCTGCCGAC GATGATGAGG ATGATGTAAA ACATGGTACC GGAACTTTGG ATACGCAGCT GCTGCAGCTG TTGAAAGACC TGCGCAAAAA AATAGCCAAA CAAAAAAATG TTCCTCCGTT TGTGGTTTTC CAGGATCCGT CACTGGAAGA GATGTGTACG CATTATCCCA TTGCGATGGA TGAACTGAAG CAGATCTCTG GCGTGGGTAA CGGTAAGGCC TTAAAATTTG GAGCCCCTTT TCTGGAGCTG ATCAAAAAAT ATGTGGAAGA CAATGACATT GAACGGCCAA TAGACCTGAT CATTAAAACC CAGGCCAATA AATCGCAGCT CAAAGTTTCA ATCATTCAGA ATATAGACAG GAAAATTGGT CTGGAAGACA TTGCCAGGGC AAAAGGGATT ACTTATGATG ATATTTTAAA GGAAATTGAA GCAATAGTAA ATTCCGGTAC TAAGCTGAAC CTCAATTATT TTGTAGATGA AATGATAGAT GAAGATCGTC AGGATGAGGT ATTTGATTAT TTTCAATCAG CTGAAAATGA CTCCATTGAT GAAGCCCTGA AAGAATTGGG CGAAACAGAT TATTCGCGTG AAGAAATCCA GCTGATGCGC ATTAAATTCA TGTCCGAATT AGGTAATTAA
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Protein sequence | MDVKKSLFDN LQTFFGFDNF KGDQESIITN VLEKKNTFVI MPTGGGKSIC YQLPALINEG TAIVISPLIA LMKNQVDQLR AFGGSDSIAH FLNSSLNKTE ITQVKSDLLN GQTKLLYVAP ESLSKQDNID FLKLIKISFV AVDEAHCISE WGHDFRPEYR KIRQVISGLG EGIPIIALTA TATPKVQQDI IKNLGMSDAT LFKSSFNRPN LFYEIRPKRD VLKEIIRYIK YNTGKSGIIY CLSRKKVEEV AESLNLNGIK ALPYHAGLEP KVRAETQDKF LMEDVEVIVA TIAFGMGIDK PDVRFVIHHD IPKSMEGYYQ ETGRAGRDGG EGVCIAFYAQ KDVDKLAKFM KDKPVSEREI GTQILKEVID YAESGVCRRK QILHYFGENF NETGCNCMCD NCKKPKKLFE AEESLLVLLK LIKKIGEKFD DAHIINVLMG LETAQTIAYE HSKLPEFGLG VVEGENHWKS LVRQAVLNNF LSKDIDNYGL LGLTNSGRDF IENPYNLKFI LNEPIDSAAD DDEDDVKHGT GTLDTQLLQL LKDLRKKIAK QKNVPPFVVF QDPSLEEMCT HYPIAMDELK QISGVGNGKA LKFGAPFLEL IKKYVEDNDI ERPIDLIIKT QANKSQLKVS IIQNIDRKIG LEDIARAKGI TYDDILKEIE AIVNSGTKLN LNYFVDEMID EDRQDEVFDY FQSAENDSID EALKELGETD YSREEIQLMR IKFMSELGN
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