| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_2047 |
|---|
| Symbol | |
|---|
| ID | 8253151 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | + |
|---|
| Start bp | 2364882 |
|---|
| End bp | 2365973 |
|---|
| Gene Length | 1092 bp |
|---|
| Protein Length | 363 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 644935695 |
|---|
| Product | beta-lactamase domain protein |
|---|
| Protein accession | YP_003092314 |
|---|
| Protein GI | 255531942 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2220] Predicted Zn-dependent hydrolases of the beta-lactamase fold |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.00517312 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAA CTATGTATGT TATTTTGCTG ATCGTTGTGC TGCTTGGGTT GACCACCATT
TTGGTACTTC GCCTGCCCGT ATTTGGGAGT GTGCCTGCCG GAAAGCGTTT GGAGCGGATA
AAAAGCCTGG CCAATTATAA AGAGGGAGCC CTGCAAAACC TTTCGCCCAC ACCCATGAAA
CCGGATGGTG TAAGTTACTG GGACATGATC AGGGGAATGA TCAAAGGTAA TGAAAACAGT
TCACCTAAAA AGCCTTTACC GCATAAGGTG CCGGATTTTA GTGGATCTGG GCAGACTAAA
CTCATCTGGT TTGGCCATTC TTCCTACTTT TTACAGATAG ATGGGGTAAA AATACTGGTA
GATCCGGTAT TTAGTAAAAA ACCTTCTCCA TTTTCTTTTT TGGGCAGCAG CGCCTACAAG
GGAACGGATT TTATCAAAGC AGAAGATTTT CCTGAAACGG ATATTATTTT AATTACCCAC
GACCATTATG ATCACCTGGA TTATCAGAGT ATCTTGAAAC TGAAGGATAA GACCAGCTTG
TTCATTACTT CTTTAGGTGC AGGTGCGCAC CTGGAGCGAT GGGGGGTACC TGCAGCTAAA
ATAAGGGAAC TGGTATGGGG CGAAGAAACG CTGGCCAGAG GCTTAAAGTT TAGGGCAGCC
CCAGCCCGCC ATTTTACAGG CAGAACATTT ACCAGAAACC AGACTTTGTG GTCGGCCTTT
GTGCTGGAAG GTACAAAACA CAAACTGTAC CTGGGAGGAG ATTCGGGGTA TGATACCCAC
TTTAAGGAGG CCGGAGAAAA GTATGGGCCT TTTGATCTGG CCATACTGGA ATGCGGACAG
TACAATACTT ACTGGCCATT GATACACATG TTTCCGGAAC AAACGGTACA GGCTGCCAAA
GATTTAAATG CAAAAGTGCT GATGCCGGTG CACTGGGCTA AGTTTAGCCT GGCCATGCAT
GCCTGGAATG AACCGGCCAT CCGAGTGGTA AAAAAAGCAA AGGCAGAAAA TTTTAAGCTC
ACTACACCTT TATTGGGAGA ATCTGTTATT TTAGATGAAA GTTATCCTTC AAAAGAATGG
TGGCTGGATT AG
|
|---|
| Protein sequence | MKKTMYVILL IVVLLGLTTI LVLRLPVFGS VPAGKRLERI KSLANYKEGA LQNLSPTPMK
PDGVSYWDMI RGMIKGNENS SPKKPLPHKV PDFSGSGQTK LIWFGHSSYF LQIDGVKILV
DPVFSKKPSP FSFLGSSAYK GTDFIKAEDF PETDIILITH DHYDHLDYQS ILKLKDKTSL
FITSLGAGAH LERWGVPAAK IRELVWGEET LARGLKFRAA PARHFTGRTF TRNQTLWSAF
VLEGTKHKLY LGGDSGYDTH FKEAGEKYGP FDLAILECGQ YNTYWPLIHM FPEQTVQAAK
DLNAKVLMPV HWAKFSLAMH AWNEPAIRVV KKAKAENFKL TTPLLGESVI LDESYPSKEW
WLD
|
|---|
| |