| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_2044 |
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| Symbol | |
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| ID | 8253148 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | + |
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| Start bp | 2360936 |
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| End bp | 2362762 |
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| Gene Length | 1827 bp |
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| Protein Length | 608 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 644935692 |
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| Product | DNA topoisomerase type IA central domain protein |
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| Protein accession | YP_003092311 |
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| Protein GI | 255531939 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA |
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| TIGRFAM ID | [TIGR01056] DNA topoisomerase III, bacteria and conjugative plasmid |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0995937 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.00726991 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAGATTG TTATTGCAGA GAAACCTTCC GTGGGACGTG AATTGGCAAA GGTTTTTGGT
GCTACAACTA AAAAGGATGG ATATATTGAA GGGAAAGGTT ATTCTTTTAC CTGGGCATTT
GGCCATTTAT TACAACTGGC CCCGCCGCAG GAATATGGTT TTATAGGTTG GCGAAGACAG
CATTTGCCTA TGCTGCCCAA GAAATTTAAA CTGGCTATCC GTAAAATCAA AACCAAGGAC
GGCATGGTTG AAGATCCGGG TGTGCGGAAG CAGCTGGATA TCATTAAAAA GTTATTTGAT
GAAGCTACAG AGATCATTGT GGCAACGGAT GCCGGGCGTG AAGGTGAACT CATTTTCCGC
TATATTTATT ATTTCCTGAA ATGCAAGAAG CCTTTTAGAA GGCTCTGGAT TTCATCGCAG
ACCGATGAAG CCATAAAAGA GGGGTTCAGG AACTTAAAGC CGGGTACAGA TTACGATACC
CTGTTCAATT CTGCACACTG CAGGTCTGAA TCTGACTGGC TGGTAGGGAT GAACGCCACA
CAGGCTTTAA GTATCTCGGC AGGAAACCGT TCGGTATTGT CGCTGGGCAG GGTACAGACA
CCTACACTGG CCATGATCTG CTCCCGTTTT CTGGAGATCA AAAATTTTGT CCCCCAAACT
TATTATCAGC TGGCCATACA GCTGGATAAG GACGGACAGC TGTTCAGGGC CATGTCGGTC
AGCAATTTTG ATAAAAAGGA AGAAGCAGAG GAACTGCTGG CTAAAATTGA AGACGTGGCC
TCGGGTTTTA GTAATGGAGG GAAGATTTTA AGTGTGGAAG CCAAGCCGCG TAAGGAACCA
CCACCATTGC TGCATGACCT GAGCAGTTTG CAGCAGGAGG CCAATAAGCG CAAGGGCTTT
ACGGCAGACC AGACCTTAAG TTTGCTCCAG GGTCTTTACG AAAGCAAGCT GGTTACTTAC
CCGCGTACGG GCAGCCGGTA TATCGGCGAT GATATATTTG CGGGTGTGCC TGCTTTGATC
GATAAGGTAA GGGGCCATAA AGATTTTGGA AAGCAGGCAG AGTTTCTGCT TACGGTTCCT
TTAAACAAGC GCAGTGTAAA TGCGAAAAAG GTAACCGACC ACCATGCCAT TTTACCTACA
GGCGAGTCCC CTTATCAGTT AAATGGTGAT AAACAAGCTG TTTATGATAT GGTAGTTGGA
CGGATGATTG AGGCTTTTCA TCAGGAATGT GTAAAAGAGA TCACTAAGAT ATCTGTCGAA
TCCGGTTCTT TATTTATTGC CAATGGCACG GTGATCCGTG CTGCGGGCTG GCGGTCGGTA
TTTAATGAAT CGGATGAGGA GAAGAAGGAT GAGGATAACC CGGCATTGCC TAAGTTGAAA
AAAGGAGAGG AGCTTCCGGT TACCAATAAG GCGTTGCTGG AAAAGCAAAC CAAACCTAAA
GCAATGTACA ATGAGGCTTC TTTGTTAAAA GCACTGGAAA CTTCGGGTAA GGACATTGAA
GATGAGGAAT TGAGGTACGC CATGAAGGAT AGCGGATTGG GTACACCAGC TACGCGTGCG
GCCATCATCG AAACGCTCAT TAGCCGTGAA TACGTTTCCA GGGAAAAGCG GAACCTGGTG
CCCACAACTA AAGGACTGGC AGTTTATGAT GTGGTAAAAG ACCAGAAAAT TGCCCAGGCT
GAACTGACCG GACAATGGGA AAAAAGGCTG GAAGAGATCA GGTCTGGTGC TTCTGTAAGT
GATTTTAAAG CCGAAATAGC CGATTACACC AAAACCATTA CCAATGAATT GCTTGCAGCG
GGCTTAACAC TGGCAGAAAA AATATAA
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| Protein sequence | MKIVIAEKPS VGRELAKVFG ATTKKDGYIE GKGYSFTWAF GHLLQLAPPQ EYGFIGWRRQ
HLPMLPKKFK LAIRKIKTKD GMVEDPGVRK QLDIIKKLFD EATEIIVATD AGREGELIFR
YIYYFLKCKK PFRRLWISSQ TDEAIKEGFR NLKPGTDYDT LFNSAHCRSE SDWLVGMNAT
QALSISAGNR SVLSLGRVQT PTLAMICSRF LEIKNFVPQT YYQLAIQLDK DGQLFRAMSV
SNFDKKEEAE ELLAKIEDVA SGFSNGGKIL SVEAKPRKEP PPLLHDLSSL QQEANKRKGF
TADQTLSLLQ GLYESKLVTY PRTGSRYIGD DIFAGVPALI DKVRGHKDFG KQAEFLLTVP
LNKRSVNAKK VTDHHAILPT GESPYQLNGD KQAVYDMVVG RMIEAFHQEC VKEITKISVE
SGSLFIANGT VIRAAGWRSV FNESDEEKKD EDNPALPKLK KGEELPVTNK ALLEKQTKPK
AMYNEASLLK ALETSGKDIE DEELRYAMKD SGLGTPATRA AIIETLISRE YVSREKRNLV
PTTKGLAVYD VVKDQKIAQA ELTGQWEKRL EEIRSGASVS DFKAEIADYT KTITNELLAA
GLTLAEKI
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