| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_1987 |
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| Symbol | |
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| ID | 8253091 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | + |
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| Start bp | 2295082 |
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| End bp | 2295651 |
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| Gene Length | 570 bp |
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| Protein Length | 189 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 644935637 |
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| Product | RNA polymerase sigma factor, sigma-70 family |
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| Protein accession | YP_003092256 |
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| Protein GI | 255531884 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.11548 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.00000960214 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGGCTGATT ACAGCAAATA TTCTGATGAG GAATTGTTTG GCCTATTAAA ACAGGACGAT
CAGAAAGCCT ATTTAGAGAT TTATGACCGG TATAAAGTAT TACTGCAAAA CCATGCGATA
AGGAAACTTA CGGATATGGA TGATGTAGAG GATATTTTGC AGGAGCTATT TATAGATCTG
TGGGATAAGC GTGCTGCCAT TTATTTAACT ACTGGCCTGG TTAACTACCT GTATACTGCA
ATGCGCAACC GCATATTTAA CCACTTTTAT AAAAAGCAGC GGGAAGGAAA TTATTTAAAC
TCACTTGTAG CCGTGATAGA AAGGGGGGAG TATGTAACAG ACCTTGCACT GCGTGAAAAG
GAATACACCG AAATCATTAA AGCTGAAATT GACGCCCTGC CCGAGCGGAT GCGAGAGGTT
TTCCTGTTGC ACCGTAACGA AGGTTTAACC TATAAGGAAA TTGCCGAGCA GCTGGGCACA
TCAGAACTTA CCGTGGCAAC CCAGGTTAAA AAGAGCCTAA AAACGCTAAG ATTAAGGTTG
GGGGCTACCG GATTTTCAAT GTTTATTTGA
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| Protein sequence | MADYSKYSDE ELFGLLKQDD QKAYLEIYDR YKVLLQNHAI RKLTDMDDVE DILQELFIDL
WDKRAAIYLT TGLVNYLYTA MRNRIFNHFY KKQREGNYLN SLVAVIERGE YVTDLALREK
EYTEIIKAEI DALPERMREV FLLHRNEGLT YKEIAEQLGT SELTVATQVK KSLKTLRLRL
GATGFSMFI
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