Gene Phep_1981 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_1981 
Symbol 
ID8253085 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand
Start bp2286127 
End bp2286696 
Gene Length570 bp 
Protein Length189 aa 
Translation table11 
GC content40% 
IMG OID644935632 
ProductRNA polymerase sigma-70 factor 
Protein accessionYP_003092251 
Protein GI255531879 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.681053 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000000579892 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGGTGATT ACAGTACTTA CACTGACCAG GAACTGCTTG TTTTGATAAA AGCGGAAGAT 
TACTCTGCCT TTAACGAAAT ATATCACCGG CATGCCGATG CTTTATATGG ATCGGCGTAT
AACATACTCC GTGACCGGGA CAGCTGCCGA GACGTTATAC AGGATATATT TATTTGGCTT
TGGCAAAACA GGTTACATTT GAATATCTCT AACTGCAGGG CCTATCTGTT AACTGCGGTA
AAATTTAAAA CCGCCAACTA CATTCGCGAC AATAAGATCG GTAAAGGATT TTTTATGGAA
CTATCAACGG TAGAGCTTAG CAGCGATGAT GAAGAAAATG CCATAGAGGT TCGCCAATTA
TCAGATTTCA TAAAAAGTTT AGCAGATCAG CTTCCTGGCA GGTATGGCGA AATATTCAGG
TTAAGCCGCT ATCAACAACT GAGTAATAAG GAAATTGCAT TACAAATGGG CATTAGCGAA
AAGACCGTGG AAAACCAGAT GACTATAGCC CTAAAAAAAA TAAAAGAGAA ACTTGGCCCC
GGCAGTGCAC TAATGTTTTT CTTTCTATAA
 
Protein sequence
MGDYSTYTDQ ELLVLIKAED YSAFNEIYHR HADALYGSAY NILRDRDSCR DVIQDIFIWL 
WQNRLHLNIS NCRAYLLTAV KFKTANYIRD NKIGKGFFME LSTVELSSDD EENAIEVRQL
SDFIKSLADQ LPGRYGEIFR LSRYQQLSNK EIALQMGISE KTVENQMTIA LKKIKEKLGP
GSALMFFFL