Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_1950 |
Symbol | |
ID | 8253054 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | - |
Start bp | 2249297 |
End bp | 2252836 |
Gene Length | 3540 bp |
Protein Length | 1179 aa |
Translation table | 11 |
GC content | 38% |
IMG OID | 644935601 |
Product | PAS sensor protein |
Protein accession | YP_003092220 |
Protein GI | 255531848 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.488377 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.000911769 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAATACA CACCTCTTCC CGAAAATGAG AAAGAACGAT TAAGGGTATT ACACAACTCT CAGGTATTTG ACCCGGCGTA CGAGGCGCAT TTTGAACGCA TCACAGAATT AGCAGCCTCC ACATGCGATA TACCAATCGC ATTTATTACC TTGATTGACC AAAATAAACA ATGGTACAGA TCAAATAAAA TCTTCACTAG TGATGAAATT GCCATAGAAA ATGAATTTTA TCGTCAAACA ATAAATTCTG CCGGAATTCT CGAAGTACTG GATCCTGGGG AGGATATCCG GTTTATATCC AATGCAAACC ATCAGTACAT TAAAATCAGT TATTATGCAG GCATTCCCCT GATTGATTCG AGTGGGAATA TTATAGGCAC TTTATCTTTA TTTGATACCA AACCCAAAAA TGAACTTACT TCCAAGCAAA AAAGAATAAT TGAACTGCTT TCTATTGAAG TCATTTCTTT AGTAAATGAA ATTAAGAGTA AAAAAGAACT TAACCATTTT TTAAAACTCT ACAAATCTTC CCACGACCTA ATCTGCGAGG CTGATATTGA TGGTTTTTTA AAACGGGTAA ACCCTGCTTT TACAAATACT CTCGGATGGC AGGAACAAGA CTTGCTCAAT AATTCTTTTT ATAGTTTTAT TCATCCTTAT GATTTACAAC CCACAAGCGA TGAATTAAAA AAATTAAGCG ATGGAAAAAA TGCTGTAAAC TTCAGCAATC GCTTTAAAAC AAAAAAAGGA GAATACAGAA CCTTACAATG GAGTGTCACC ACGGAAACGG ATTCTCAGAA AATACTGGCA ATTGCAAGAG ATGTTACTAA AGATAAAAAT CTTCAGCAAA AAATTCTAAC CAGCGAGAGC AGATTAAAAT CATTTATCGA AAATGCACAG GGTTTAATGT TTACCCATGA TTTATCAGGT AATCTTTTAT TTATCAATAA CGCCGGGGCC CATTATTTAG GCTACACAAA ACAGGAAATG CAGAGCATGG GCCTGTTCGA CCTTATCCCT AAAGACCACC ATGCTGCACT TAACGATTAC CTAAGAGAAA TTAAAAATAA GGGTAAAGCC CAGGGGCTAA TGACTACTGT ACACAAAAAA GGTAACCATA TCATATGGAT ATTCAACTGT GTGCTGGAAA ATAATGCGAC AAACAAGCCT TATGTTATCT GTAATTCAAT TGACATCACG GAGCGGCATA ACCTGGTAAA AGAATTAAGG ACCAGGAATA AAAAACTTGA ACTGGCCAAT GACATTGCCC GACTTGGAAA CTGGGAACTA AACCTGGTTG AACAAAAACT GACCTGGTCT GAAGTTACCC GTCAGATATT TGAAGTAGGA CATGACTTTG AACCAAGTTT GGAAAGCGAG CTGTTGTACT ATAAACCAGG AACTACCAGG GAAAATAGGT TCAATGCACT TAATGCAGCT GTACTTCATG GAAAAAGCTG GGACCTGGAA TTAGAACTGC TCACCGCTAA GGGAAACGCA ATCTGGATCA GATCAATCGG AGTTCCAGAA TTCCTGGAAG GACGCTGTTA TAAAATATCT GGCACCATTC AGGACATCAC CAAAATTAAG CGCATGGAAG CGAACTTAAT TTCGGCAAAA GAAGATGCAG AATCAGCCAA TAAAGCAAAA TCAGAGTTTC TGGCCAATAT GAGCCATGAA ATCAGGACCC CATTAAATGG TATCATCGGA TTTACCGATC TGCTGATCAA AACGCAGCTC AATGAAACCC AGCAACAATA TCTTTCTATA GTTACACAGT CAGGTAATGC CTTATTAAAT ACCATTAATG ACATTTTAGA CTTCTCGAAA ATTGAGGCTG GCAAACTAGA GATGAACTGG TCTAAATTCA ATCTCTATGA AATGGCAGAA GAATCTGCCG ATGTTATAAA ATACCAGGTA CAAAGTAAGG GCCTTGAAAT GTTGTTGAAT ATTTCGGCCG ATCTGCCCAA ATATATCTGG GCTGACGAAC TCAGACTTAA ACAGATCCTG ATCAATTTAT TAGGAAATGC TGTAAAATTC ACTGAAAGCG GTGAAATTGA ACTCAAGGTA GAAGCACTGA CAAACCCTGA ACTACCTGAA ATTAAATACC GCTTTTCTGT GAGGGACACA GGTATAGGCA TTAACCCCGA TAAAAAGCTT AAAATATTCG ATGCATTTTC ACAGGAAGAC GCATCTACAA CAAAAAGGTA TGGGGGTACA GGATTGGGCT TAACAATTTC AAACAAATTA TTGGGGCTAA TGAACAGTCA GCTCCAGGTT GAAAGTGTAA TTGGTAAGGG AAGTGTATTC TATTTCGAAA TTATCCTCCA GTCTGAGCCA GGTGAATCCA TTGAGATACA GAACCTGGAT AAGATAAAGA ATGTCCTGAT TGTTGATGAT AACAAAAACA ACAGACTGAT CATCAATAAA ATGTTATCCC TGAAACAGAT CAGATCAGTG GAAGCCGGAA GTGGCCATGA AGCGATAGGC ATGATCTCTA AGGGTGAAAA ATTTGATGTG ATCCTGATGG ATTACCACAT GCCTGATCTG GATGGACTGG AAACTATAAA AAAGATAAGG GAGATCCTGA AAGATTCAGA TAAAGACCAA CCTATTGTTT TGTTGCACAG TTCATCAGAC GAAACAATTA TAAAGGCCTG TGAAGAACTG AATGTACATC ATCGTTTGTT AAAACCGATC AAGCTTAAGG ATATGTACAG CTCACTTTTC AGGGTAATTT CTAAGAAAAC TGAAAAACCG GGTGCAGCCG TACAGGAAGC AGAGCGAATG GACGATCCGA TCCAGGTTTT AATAGCAGAA GATAATGCGG TTAACATGTT ACTGGCCAAG ACTATTGTAA GACGAATTGC ACCAAATGCC ACTATATTCG AGGCAAAAAA TGGTCTGGAA GCTCTTGAAC TTTATAAGAC AACCAAAATT GATATCGTTC TGATGGATAT TCAGATGCCT GAAATGAATG GCTATGAAGC TACAAAAAAA ATCAGGGCAG TAAGACATAA ACCCCATACC CCTATAATTG CATTAACTGC CGGAAATGTT AAGGGAGAAA AAGAGAAATG CTTTGCGGCA GGTATGGATG ATTTTATATC CAAACCCGTA GTAGCTCATA CCATTGCGCT TTCCCTGAAA AAATGGCTTA AGAACCCTAC AGAAGACCCA CATAGTGATC TATCCCTATC GCCATCCGAC GATTCAGATT ACCACTTCAA TATAGAGTTG CTAAAAGAAT ATGTAGGTGA TGATGAAACT GTTTTAACAA AAGTACTGGC ACTCCTCAGA ACCGAACTGA TGAATTTCTC CAAAGAATTT AAGGAGCATA CGTCAGTTAG AAACCTCAAT AAGGTAAAGG AACTGGGTCA AAAAGTTTAC GATACCGCAA TAGTTTCCGG TTTAACTGCA CTTGCCGTTA TTGCAAAAAA AGTAGCTTCC GTTACTACTT ACGATGAAAC CGAAATTAAC CAGTTGTTGG CAGAGGCCCA ACAGGAAATC AAAACAGCAA TAAGCTTAAT TGTCAGATAA
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Protein sequence | MKYTPLPENE KERLRVLHNS QVFDPAYEAH FERITELAAS TCDIPIAFIT LIDQNKQWYR SNKIFTSDEI AIENEFYRQT INSAGILEVL DPGEDIRFIS NANHQYIKIS YYAGIPLIDS SGNIIGTLSL FDTKPKNELT SKQKRIIELL SIEVISLVNE IKSKKELNHF LKLYKSSHDL ICEADIDGFL KRVNPAFTNT LGWQEQDLLN NSFYSFIHPY DLQPTSDELK KLSDGKNAVN FSNRFKTKKG EYRTLQWSVT TETDSQKILA IARDVTKDKN LQQKILTSES RLKSFIENAQ GLMFTHDLSG NLLFINNAGA HYLGYTKQEM QSMGLFDLIP KDHHAALNDY LREIKNKGKA QGLMTTVHKK GNHIIWIFNC VLENNATNKP YVICNSIDIT ERHNLVKELR TRNKKLELAN DIARLGNWEL NLVEQKLTWS EVTRQIFEVG HDFEPSLESE LLYYKPGTTR ENRFNALNAA VLHGKSWDLE LELLTAKGNA IWIRSIGVPE FLEGRCYKIS GTIQDITKIK RMEANLISAK EDAESANKAK SEFLANMSHE IRTPLNGIIG FTDLLIKTQL NETQQQYLSI VTQSGNALLN TINDILDFSK IEAGKLEMNW SKFNLYEMAE ESADVIKYQV QSKGLEMLLN ISADLPKYIW ADELRLKQIL INLLGNAVKF TESGEIELKV EALTNPELPE IKYRFSVRDT GIGINPDKKL KIFDAFSQED ASTTKRYGGT GLGLTISNKL LGLMNSQLQV ESVIGKGSVF YFEIILQSEP GESIEIQNLD KIKNVLIVDD NKNNRLIINK MLSLKQIRSV EAGSGHEAIG MISKGEKFDV ILMDYHMPDL DGLETIKKIR EILKDSDKDQ PIVLLHSSSD ETIIKACEEL NVHHRLLKPI KLKDMYSSLF RVISKKTEKP GAAVQEAERM DDPIQVLIAE DNAVNMLLAK TIVRRIAPNA TIFEAKNGLE ALELYKTTKI DIVLMDIQMP EMNGYEATKK IRAVRHKPHT PIIALTAGNV KGEKEKCFAA GMDDFISKPV VAHTIALSLK KWLKNPTEDP HSDLSLSPSD DSDYHFNIEL LKEYVGDDET VLTKVLALLR TELMNFSKEF KEHTSVRNLN KVKELGQKVY DTAIVSGLTA LAVIAKKVAS VTTYDETEIN QLLAEAQQEI KTAISLIVR
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