| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_1914 |
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| Symbol | |
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| ID | 8253018 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | - |
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| Start bp | 2210067 |
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| End bp | 2213249 |
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| Gene Length | 3183 bp |
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| Protein Length | 1060 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 644935565 |
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| Product | WD40 domain protein beta Propeller |
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| Protein accession | YP_003092184 |
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| Protein GI | 255531812 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.657093 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATAAAA GCTATACTTT CCTCAAAAGA TTAATTCCTG TTCTGTTCAT CTTCACGATG
TTTTCTACCT CCCTTCATGC CCAGTATTTC GGACAAAACA GGGTTCGCTA CAACAATGAG
AAGTTTAAAG TACTGCAGAC CCCACATTTC GAGATCTACT ATTACCTTAA AAATGAACAG
CTGATACAGA AATTTGCCCA GGATGCAGAG ACCTGGTATA AAATGCACCA GGAGATTTTC
AGGGATACCT TTCTGAAAAA GAACCCGATC ATACTTTACA ATAACCATCC TGATTTTCAG
CAAACCACTG CCCTGCAGGG CGAGGTTGGC ATAGGAACCG GCGGGGTTAC AGAAGCTTTT
AAAAACAGGG TAATCATGCC GGTGATGGAG CTGAATAACC AAACACGGCA TGTTTTAGGT
CATGAGCTGG TACATGCTTT TCAATACCAC CTTTTACTGG AAAAAGATTC TGTCAACCTG
GAAAATGTAA GCCAGATCCC CTTATGGATG ATAGAGGGTA TGGCCGAGTA CCTTTCTGTA
GGAAAAACGG ATGCCTTCAC TTCCATGTGG ATGAGGGACG CTTTGCTGAA CAGGGATATC
CCTTCCTTAA AAGACCTTAC CAATTCCAAT AAATATTTTC CCTACAGATA TGGACAGGCA
TTCTGGACTT TTGTTGGCTC TGTATATGGC GATACCACCA TCGTTCCCTT ATTTAAGGCC
ACCGCAAAAT ATGGTTATGA GAACGGATTG AGGTATACCT TCGGGTATGA TGACAGGACG
CTTTCAGGTC TCTGGAAAAA TGCCATTGAA GCGCATTACC GCCCTATGTT AAGGGCAGAC
AGCTCCCAGA TCAGGATTAC CGGAACAAAG ATCATCGACA ATAAAAATGC AGGGAACATG
AACGTAGCGC CCTCTATTAG TCCGGATGGC AAATACCTTG CCTTCTTATC TGAAAAAGAT
CTTTTTGGAA TAGACCTCTT TCTCGCCGAT GCAAAAACCG GTAAAATTAT CAGAAAGCTC
AGCAGCCAGG TCGCCAATTC ACATATCGAC GATTTTAACT TCCTCGAATC TGCAGGTACC
TGGTCGCCAG ACGGTAAACA ATTTGCCTTT AGCATTTTCA GCAAGGGCAA AAACCAGCTG
ATGATCATCA ATATAGACAA TGGCAGCGTT GCCTTGCGTG CAGACATGGG CGATGTGGCG
CAGTTTGGCA ACTTGTCCTG GTCGCCAAAT GGCGATGACA TCGCTTTCTC CGGAATGATA
CAGGGCCAAA GTGATATCTT CTCTTATAAC CTTAAAACGA AAAAGGTTAC CCAGATTACC
AATGACGCCT ATTCAGACTA TGCCCCCGCC TATTCACAGG ATGGAAAGAA AATAGCCTTT
TCATCAGACA GGGCCTCTAT AACTAAAAAC AACAATACGG CAGTCCACTC CATCAACCTG
AGTATTTACG ATATTGAAAG CAAAACTTTA ACTGATATCC CCGTATTCCC TGGCGCCAAT
AACCTCAATG CCCAGTTTTC TGGCGACAGC AAAAGGCTCT TTTTCTTATC CAACAGGGAC
GGGTTCAGGA ATCTTTATGC GTACAACCTG GCCGACAATA CGGTTAAACA GCTAACCGAT
TATTTTACGG GGATCAGTGG CATTACGGAA TTTTCTCCGG CCATCTCCGT ATCCAGAAAT
GACGACATCG TGTACAGCTA CTACCGTTCG CAGCGTTATA CTTTATACAA CTCCCCGATC
AGCAGTTTCC GTTCAAAACC GGTAGATGCC AATGCAGTAA ATTTTGATGC TGCCGTGCTG
CCACCCATGG AAACCATTGG TGTTGACATT GTAAACTCCA ACCTCGGCAA TTTTGAACGC
TTTGAAAAAA CCATAGCAGA TTCTATGCGC CTTGTGCCTT ACAAGCCTAA ATTTAAGCTG
GACTACCTCG CCAACAGCGG CGTAGGTGTT TCCACCAGCC GCTTCGGTAC TGGTGTACAG
GGTGGTATTG TCGGAATGTT CAGCGATATA CTTGGTCGTA ACCAGATCGT TGCCAACCTT
TCTGTAAACG GGGAGATCTA TGATTTCGGG GGACTGGTGG GTTACATCAA CCAGCAAAAC
CGGATCAACT GGGGCGTAGC TTTATCGCAT ATCCCTTATA TCACCGGTTT CCGAGAAATT
GTTCAAACTA CACTGGACAA CAATGGAACT CCGGTTAGCG TAATTGACGA CAGGACCAAC
CTGATCCGTA CATTTGAAGA CCAGGCACAG GTATTTGGTG CCTACCCTTT CAATAAGGTA
CACCGTTTTG AAACAGGTGG TGCATTCTCA CGTTACAGCT ACAGGGTAGA CCGCATCAGC
AATTACTATG AGAACCTGAA TGGTTATCCC GGTTATTACA TCACTTCGGA CAAAAGAAAA
GTACCACTGA GCGAAGCGAC CAATGATCTG GGAGTTCCGC TCAAAAGCTT TAGCATCTTC
CAGCTCAATG CTTCTTTTGT GGGCGACAAT TCCATCAATG GCATCACCTC ACCTCTGGAG
GGTTTCAGGT ACCGCCTGGG CATGGAACAG TATTTTGGTG ATTACAAATT CTCGGCAGCA
ACCATTGATG TAAGAAAATA CTGGCGCTTA AAACCCATTA CCATCGCTGC CAGAAGCTAT
AACTACCTGA GGATTGGTAA AGACGGCGAA AACTTATACC CGCTATATGT AGGATACCCA
TATTTCATCA GAGGTTATGA AGCGAATTCC TTATACAATA GTGGGAGTAC CGGAACCAGT
AATGGTTTTG ATATCAACCA GCTTTCAGGA AGTAAAATGG CTGTATTTAA TTTTGAACTC
CGGCTTCCTT TTACAGGTCC AAAAAAGCTG TCTGCCATTC CTTCTAAATT TCTCTTTACA
GACCTGAATC TCTTCTTTGA TGCCGGTCTG GCCTGGAACG AAGACTCTAA AGTGGTATTT
AAAAACCAGC CCACCAATAA CATCAGACCC AAGCTGGGGT CTGACGGCCT GCCGGTTAAA
GACCTCAACA ATAATCCGGT ATATACCGGT ACCAACGAAC GTGTTCCGGC ATTAAGTGTG
GGTATATCTT TACGTGTTAA TGTATTCGGT TACTTTGTAC TCGAACCTTA TTATGCCATT
CCATTCCAGC GTAAAGATAT CTCAGCAGGT GTATTCGGCC TTACTTTTGC CCCGGGATGG
TAA
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| Protein sequence | MNKSYTFLKR LIPVLFIFTM FSTSLHAQYF GQNRVRYNNE KFKVLQTPHF EIYYYLKNEQ
LIQKFAQDAE TWYKMHQEIF RDTFLKKNPI ILYNNHPDFQ QTTALQGEVG IGTGGVTEAF
KNRVIMPVME LNNQTRHVLG HELVHAFQYH LLLEKDSVNL ENVSQIPLWM IEGMAEYLSV
GKTDAFTSMW MRDALLNRDI PSLKDLTNSN KYFPYRYGQA FWTFVGSVYG DTTIVPLFKA
TAKYGYENGL RYTFGYDDRT LSGLWKNAIE AHYRPMLRAD SSQIRITGTK IIDNKNAGNM
NVAPSISPDG KYLAFLSEKD LFGIDLFLAD AKTGKIIRKL SSQVANSHID DFNFLESAGT
WSPDGKQFAF SIFSKGKNQL MIINIDNGSV ALRADMGDVA QFGNLSWSPN GDDIAFSGMI
QGQSDIFSYN LKTKKVTQIT NDAYSDYAPA YSQDGKKIAF SSDRASITKN NNTAVHSINL
SIYDIESKTL TDIPVFPGAN NLNAQFSGDS KRLFFLSNRD GFRNLYAYNL ADNTVKQLTD
YFTGISGITE FSPAISVSRN DDIVYSYYRS QRYTLYNSPI SSFRSKPVDA NAVNFDAAVL
PPMETIGVDI VNSNLGNFER FEKTIADSMR LVPYKPKFKL DYLANSGVGV STSRFGTGVQ
GGIVGMFSDI LGRNQIVANL SVNGEIYDFG GLVGYINQQN RINWGVALSH IPYITGFREI
VQTTLDNNGT PVSVIDDRTN LIRTFEDQAQ VFGAYPFNKV HRFETGGAFS RYSYRVDRIS
NYYENLNGYP GYYITSDKRK VPLSEATNDL GVPLKSFSIF QLNASFVGDN SINGITSPLE
GFRYRLGMEQ YFGDYKFSAA TIDVRKYWRL KPITIAARSY NYLRIGKDGE NLYPLYVGYP
YFIRGYEANS LYNSGSTGTS NGFDINQLSG SKMAVFNFEL RLPFTGPKKL SAIPSKFLFT
DLNLFFDAGL AWNEDSKVVF KNQPTNNIRP KLGSDGLPVK DLNNNPVYTG TNERVPALSV
GISLRVNVFG YFVLEPYYAI PFQRKDISAG VFGLTFAPGW
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