| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_1887 |
|---|
| Symbol | |
|---|
| ID | 8252991 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | - |
|---|
| Start bp | 2180044 |
|---|
| End bp | 2182014 |
|---|
| Gene Length | 1971 bp |
|---|
| Protein Length | 656 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 644935538 |
|---|
| Product | transglutaminase domain protein |
|---|
| Protein accession | YP_003092157 |
|---|
| Protein GI | 255531785 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATATC TTCTTTTTCT GTTTGTATTT TTTTGTTCCA TTGCTGTAAG GGCACAGGAT
TTTGGATTTG GGGAAATCAG CGGGGATGAT CTTGACTTAA AAAAGGTAAA AACAGACAGC
AATGCCAATG CAGTAGTGTT AAAGGAATTT GGTACGGCAT CAGTTCGTTT AGACGAAAGT
TATGGCAATC TTTATATAGA TTTTGAATAC CATGTCAGGA TAAAAATACT GAACAAAAAT
GGCTTCGGGA GTGCAAATGT TGTCATTCCC CAAAGAATTT ATGGCGATAA GGAAGACATG
GTCCAGAACC TGAAAGCAGT GACCATAAAT TATATAGACG GGCAATTTAC ACAAACACCG
CTGGATAAAA AAAAGGTGTT TACCGAGAAA AAGAACAAAT ATGTGGTACT GACTAAATTT
ACCATGCCCA ATCTGGTTGA GGGCAGTATT ATTGAATACA GCTACCGCCT CTATTCGCAT
GGCCTTTTTA ACTTCAGGAG CTGGGAATTC CAGTCGGACA TCCCGAAACT GTACAGCGAA
TACATTGCCA TTATCCCTGC CCTTTACACT TATAATGTAT CCTTACGTGG GGCACAGAAG
CTCAGTTCAC AAAATGCTGA ACTCTATAAA GAATGCCTCA GAATTTCAGG AAGGCCCTAT
GACTGTTCAA AAATGACCTA TATCATGAAA GATATCCCGG CATTGGTTGA AGAAGATTAC
ATGACTGCCC CAAGTAATTT CAGGTCGGCC ATTAATTTTG AACTCTCCGA ATACTACCTG
CTGTCGGGCG GGAAGAAAAG TGTAACCAAG GAATGGAAGG ATGTGGACTT TGAGCTGATA
AATGACAAAT CATTTGGCAG CCAGATGAAA AGAAAAGACC TTTTTAAAGA GCTGTTGCCA
GAGATCCTGA AAAACAAGAC TGCACCGCTG GACAAGGCAA AGGAAATCTA TGATTACATT
AAGCGCAACA TCAAGCGAAA CGGATTTATT GGAATTCAAA GTGAAAATAC AATAAAAAAA
GCTTTGGAAA CCCATTCCGG CAATACGGCG GACATTAACC TGGCGCTGGT AGCTGCATTA
AGTGCAGCGA ATCTGGATGC AGAAGCGGTT ATCCTTTCGA CCCGTTCCAA TGGCACTGTG
AATAACTTAT ACCCCGTGAT CACTGATTTT AATTATGTAA TAGCTAAGGT AAACATTGAG
GGAAAAAGCT ATTTGCTGGA TGCAACAGAG CCTTTAATGC CATTTGGTTT GCTGCCACTC
CATTGCATTA ACGGACAGGG AAGGGTAATC AACCTGAAAA AACCCTCCTA CTGGTATGAC
CTTAAAGCGA GTCAGAAAGA AACACTCCGG TACAGTTTAA TTGCTGAGCT GGGAAAAGAT
GGAAAAATAC GGGGTAACCT GACCATCCAC GCCATTGGTT ATGCGGCCTA TAATAAACGT
AAAAAGATCC TGGCAGCAAG TTCGGTGGAT GAATATGTAG AGAAGCTGGA TGAGAGTATG
CCCCAGATCA GGATCCTTAA ACATGCAATC CATAACCTGG ACAGCCTGGA AAACCTGCTT
ACCGAAAATT ATGAAGTTGA AATGTCGGCC TTTTCCAACC TCAATAGTGA CCCTTTATTT
TTTAACCCGT TTTTTATCGA CCGGATCAGC AAAAATCCTT TCAATTTAAA TGAGCGTACC
TATCCTGTAG ATCTGGGTGC AGAAAAGGAA ATCCGCATCA ACATGACAAT TAAACTGCCT
GATAACTATA ATTTGGCCGA CAAGCCTAAA GAACTGAACA TGGTACTGGC CGATGCGGGT
GGCAGGTTTA TCTGTACAAC TGCTGTTGAA GACAATATCC TGCTGTTTAA CCAGCTGATG
CAGCTTAACA AACCAATTTA TAGCTCTGCA GAATACCTTT CACTTAAGGA GTTCTACAGC
AGGATCATCC AATTGCAGAA AACGGATATT ATCCTTAAAA AATCAAAATA G
|
|---|
| Protein sequence | MKYLLFLFVF FCSIAVRAQD FGFGEISGDD LDLKKVKTDS NANAVVLKEF GTASVRLDES
YGNLYIDFEY HVRIKILNKN GFGSANVVIP QRIYGDKEDM VQNLKAVTIN YIDGQFTQTP
LDKKKVFTEK KNKYVVLTKF TMPNLVEGSI IEYSYRLYSH GLFNFRSWEF QSDIPKLYSE
YIAIIPALYT YNVSLRGAQK LSSQNAELYK ECLRISGRPY DCSKMTYIMK DIPALVEEDY
MTAPSNFRSA INFELSEYYL LSGGKKSVTK EWKDVDFELI NDKSFGSQMK RKDLFKELLP
EILKNKTAPL DKAKEIYDYI KRNIKRNGFI GIQSENTIKK ALETHSGNTA DINLALVAAL
SAANLDAEAV ILSTRSNGTV NNLYPVITDF NYVIAKVNIE GKSYLLDATE PLMPFGLLPL
HCINGQGRVI NLKKPSYWYD LKASQKETLR YSLIAELGKD GKIRGNLTIH AIGYAAYNKR
KKILAASSVD EYVEKLDESM PQIRILKHAI HNLDSLENLL TENYEVEMSA FSNLNSDPLF
FNPFFIDRIS KNPFNLNERT YPVDLGAEKE IRINMTIKLP DNYNLADKPK ELNMVLADAG
GRFICTTAVE DNILLFNQLM QLNKPIYSSA EYLSLKEFYS RIIQLQKTDI ILKKSK
|
|---|
| |