| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_1858 |
|---|
| Symbol | |
|---|
| ID | 8252962 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | + |
|---|
| Start bp | 2149789 |
|---|
| End bp | 2150739 |
|---|
| Gene Length | 951 bp |
|---|
| Protein Length | 316 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 644935509 |
|---|
| Product | D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding |
|---|
| Protein accession | YP_003092128 |
|---|
| Protein GI | 255531756 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0111] Phosphoglycerate dehydrogenase and related dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.6942 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTAAGA TACTTGCAAA CGACGGGATA GATCCTGTTG GTAAAAAATT ATTAGAAGAA
GCGGGTTTTG TGGTGGATAC AGATACTGTA CCGCAAGACC AATTGGTTGA AGCTTTAAAA
AATTACGATG GTATTACGGT TAGAAGTGCA ACCAAGTTAC GTAAGGACCT GATAGATCAG
GTGCCAAACC TAAAGCTGAT TGGCCGTGGT GGTGTTGGAA TGGATAATAT TGACGTGGAT
TATGCCCGCA GTAAAGGCAT AGCAGTAGTA AATACACCTG CCGCTTCATC CTTGTCGGTA
GCTGAGCTTG TTTTTGCACA CCTGTTTACC GGTATCCGTT TTCTACAGGA TTCCAATAGA
AAAATGCCGG TTGAAGGCAA TACCAAATTT AATGCCTTGA AAAAAGCCTA TGCTGGTGGT
GTAGAGTTAC AAGGCAAAAC TATGGGTATC ATTGGGTTTG GGCGTATTGG TCGTGAAACT
GCTAAAGTGG CACTCCGACT GGGCATGAAC GTTTTGGCTT ATGATCTTTA CCCTGCAGAG
GGTACACTGC CTTTAACTTT CCAGGGCGGC GTTTCGGTAG AAATTCCTTT CAAGACCGTT
TCACTGGATG AAGTGATTGC GAAGAGTGAT TTCATCAGTT TACATACACC TTTTGCGGAT
AAACCTATTT TAGGTACAGC AGAGTTTGCT AAAATGAAAA ACGGTGTGGG CGTGGTAAAC
TGTTCACGTG GTGGTACCAT TGATGAGACG GCTTTAATTG CGGCCCTTGA CAGCGGTAAG
CTTGCTTTTG CAGGCCTGGA TGTATTCGAT AATGAGCCTA CGCCGGACAC TGCTATTTTA
CAGCATCCAA AAATATCTTT AACGCCTCAT ATTGGTGCTG CTACCAATGA AGCCCAGGAA
CGTATTGGTA CGGAACTGGC TTCCCTGATT ATTGAGCACT TTAAGAAGTA G
|
|---|
| Protein sequence | MIKILANDGI DPVGKKLLEE AGFVVDTDTV PQDQLVEALK NYDGITVRSA TKLRKDLIDQ
VPNLKLIGRG GVGMDNIDVD YARSKGIAVV NTPAASSLSV AELVFAHLFT GIRFLQDSNR
KMPVEGNTKF NALKKAYAGG VELQGKTMGI IGFGRIGRET AKVALRLGMN VLAYDLYPAE
GTLPLTFQGG VSVEIPFKTV SLDEVIAKSD FISLHTPFAD KPILGTAEFA KMKNGVGVVN
CSRGGTIDET ALIAALDSGK LAFAGLDVFD NEPTPDTAIL QHPKISLTPH IGAATNEAQE
RIGTELASLI IEHFKK
|
|---|
| |