Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_1851 |
Symbol | |
ID | 8252955 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | - |
Start bp | 2140698 |
End bp | 2142125 |
Gene Length | 1428 bp |
Protein Length | 475 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 644935502 |
Product | MATE efflux family protein |
Protein accession | YP_003092121 |
Protein GI | 255531749 |
COG category | [V] Defense mechanisms |
COG ID | [COG0534] Na+-driven multidrug efflux pump |
TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00783953 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.201536 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTCAAAAC AGAAAACAGC TTCCATGGGC AAGCTATCTC AAATTTTTAT TCTTTTAAAA CAGGCCCTTA AAGGTGAAGA GCTCGACTTT ACACAGGGCA GTATGCGCCG CGCCGTGCTT TTACTTGCCA TCCCTATGAT GTTGGAAATG GCGATGGAGT CTGTTTTTGC ATTGGTAGAC CTCTATTTTG TAGGTCACCT GCACAACAGC AGCCATGCCA TCCAAACGGT AGGTTTAACA GAATCGGTAC TCACCGTTAT TTACTCGCTG GCCATAGGTA TGAGCATGGC TGCTACCGCG GTAGTGGCCC GCAGGGTTGG CGAAAAAGAC CCGGAAGCCG CCGGAAAAGC GGGTATGCAG GCCATCTTTA TCGCCGTATT TTTTAACATA CTGATCAGTA TTGCCGGTTT TATTTATGCC CGGGAAATCC TGTTGCTGAT GGGGGCTTCG GTAGAAACAG CCGATCATGG TACTACTTTT ATGCGCATCA TGATGGGTGG AAGTGTGATC ATTGTATTGC TGTTCCTGAT CAACGGCATA TTCCGCGGTG CGGGTAATGC TGCCATAGCC ATGAAAAGCT TATGGATCGC CAATATTGCC AACATCATTT TATGTCCTGT ACTGATCAAT GGATTTGGCC CCGTACCTGC ATTTGGATTA ACAGGCGCTG CCATGGCTAC CTCCATGGGC CGGGGCATAG GTGTTTGTTA CCAGCTGTAC CATTTATTTA AAGGCAGCGG GGTATTAAAG ATCAAACTGG CTTATTTAAA ACCACACTGG GAGCAGATAA AAGCCTTGTT AAAAATTGCC ACACCTGGTA TATTCCAGTT TGTGATCGCC TCCTGCAGCT GGATATTTTT AGCACAGCTG GTGGCTACAA CCGGAGGAGA TCACGGTTCG GCAGGCTATC AGACGGCCTT AAGGTTAATG ATGTTCTTTA TGCTGCCAGC CTGGGGCATG AGCAATGCGG CTGCTACACT GGTAGGTCAG AACCTCGGTG CCAAACAGCT GGAACGCGCT GAACAGTCGG TCATGAAAAC TGCCAAATAC ATTATTATAT ATATGTTAAT GGTAATGGCT TTTACTTTTA TTGGCGGCAG GTTTTTCATC TCTTTTTTCA GCAATGATGT GCTGATACAA GATGTAGCCA TAAACGCCTT GCAGATCATG AGCCTTGGTT ACATTTGCTA CGGCATGGGT ATGGTGCTGA TCAGTACTTT TAATGGTGCC GGCGATACCT GGACACCTAC CTGGGTCAAC TTTTTTGGCT TCTGGTTGTT CCAGATTCCC CTGGCCTATG TTTTGGCCAA ACACTTTGAC ATGGGCCCAA CCGGCGTATT TATTGCTATT CCGGTGGCGG AAACGGGAAT TGCCCTTGCC GGTTTCATCC TGTTCAGGAG AGGGAAATGG AAAACAGTTA AGGTTTAG
|
Protein sequence | MSKQKTASMG KLSQIFILLK QALKGEELDF TQGSMRRAVL LLAIPMMLEM AMESVFALVD LYFVGHLHNS SHAIQTVGLT ESVLTVIYSL AIGMSMAATA VVARRVGEKD PEAAGKAGMQ AIFIAVFFNI LISIAGFIYA REILLLMGAS VETADHGTTF MRIMMGGSVI IVLLFLINGI FRGAGNAAIA MKSLWIANIA NIILCPVLIN GFGPVPAFGL TGAAMATSMG RGIGVCYQLY HLFKGSGVLK IKLAYLKPHW EQIKALLKIA TPGIFQFVIA SCSWIFLAQL VATTGGDHGS AGYQTALRLM MFFMLPAWGM SNAAATLVGQ NLGAKQLERA EQSVMKTAKY IIIYMLMVMA FTFIGGRFFI SFFSNDVLIQ DVAINALQIM SLGYICYGMG MVLISTFNGA GDTWTPTWVN FFGFWLFQIP LAYVLAKHFD MGPTGVFIAI PVAETGIALA GFILFRRGKW KTVKV
|
| |