| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_1811 |
|---|
| Symbol | |
|---|
| ID | 8252914 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | + |
|---|
| Start bp | 2110828 |
|---|
| End bp | 2112015 |
|---|
| Gene Length | 1188 bp |
|---|
| Protein Length | 395 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644935462 |
|---|
| Product | aminotransferase class V |
|---|
| Protein accession | YP_003092082 |
|---|
| Protein GI | 255531710 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0520] Selenocysteine lyase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0747034 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.00000000219699 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAATAGCA TTAATATACA AGAGTTGAAC AAATACCGGG CTGATACATC GGGCTGCTCC
TGCCTGGTAC ATTTCAACAA TGCTGGTGCT TCTTTGCCGC CCGACGTAGT GATCGATACT
GTAGTTGACT ATTTAAAAGA AGAAGCAACT TATGGTGGCT ACGAGACCGA ATATAAGAAC
ATTGCCCGTA TCGAGGGTGT TTACCAGTTG ATCGCAGACC TGATCGGCGC GAACAAAGAC
GAAGTAGCCA TTTTCGAGAA CGCGAGTGCA GCATGGGGAA CTGCTTTTAA AGGTTTGGCC
TTGGCTGATG GTGACGAGAT CATTACCTGT GAACAGGAAT ACGTTACTAA TATTGTAGGT
ATGGCTGATG CCCGGAAGAG AGGTGTTAAA GTGACTGTAA TTACCAACGA CGAACATGGC
AACTTTCCAT TGGCCGAACT TGAAAACGCG ATAACCCCGA ACACGAAGCT GATCGCAGTA
ACACACATTC CATCATCGGG TGGTGGTATC CTACCTATCA ACGATATCGG CAAAGTGGCC
AACAAACACC AGGTGCTGTA TATGATAGAT GCCTGCCAAA CAGCCGGACA ATATCCCATC
GATGTTACAG CGATTGGTTG CGATATCCTT TCAGCTACTG GCCGTAAGTA TTTGCGTGCC
CCTCGTGGTA CAGGCTTTCT GTTCGTTAAG CGAAGTGTCC AGGATAGGCT TTCACCGGTA
CTTAAGGACT TTCTTGCAGC AGGTAATGTA AGCCTGGACG GCTACAACTT GCGCAATGAT
GCCCGCCGCT TTGAATTATA CGAGAAAAGC AGGGCCTTAA CGCTGGGGTT GGGTAAAGCG
ATCGAGTATG CCCTCGCCAT CGGCTTAGAA CGTATCTGGC ACCGCGTTCA ATACCTGGCA
GATATTACCC GTTCAGCGTT GAACAGTATA CCTGGCATAA CGGTTCATGA TATGGGCAAT
GAAAAGTGCG GCATTGTTAC CTTTTCGGTC AATGGTATCG ACAGCATGTT GGTAAGGGAT
AAGCTGGTCG AGAACGGCGT CAACGTGTCT TTTGGCGGGC AACAAGCAAC ACCGATCTAT
ATGGATAAGC ACCAACTTAA GGGTATCGTA AGAGCATCAC TGCACTATTA CAATACTGAA
GCCGAGATAG CAGCCATGTG CGATCTGTTG AGGCGGATTA ATAATTAA
|
|---|
| Protein sequence | MNSINIQELN KYRADTSGCS CLVHFNNAGA SLPPDVVIDT VVDYLKEEAT YGGYETEYKN
IARIEGVYQL IADLIGANKD EVAIFENASA AWGTAFKGLA LADGDEIITC EQEYVTNIVG
MADARKRGVK VTVITNDEHG NFPLAELENA ITPNTKLIAV THIPSSGGGI LPINDIGKVA
NKHQVLYMID ACQTAGQYPI DVTAIGCDIL SATGRKYLRA PRGTGFLFVK RSVQDRLSPV
LKDFLAAGNV SLDGYNLRND ARRFELYEKS RALTLGLGKA IEYALAIGLE RIWHRVQYLA
DITRSALNSI PGITVHDMGN EKCGIVTFSV NGIDSMLVRD KLVENGVNVS FGGQQATPIY
MDKHQLKGIV RASLHYYNTE AEIAAMCDLL RRINN
|
|---|
| |