| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_1800 |
|---|
| Symbol | |
|---|
| ID | 8252903 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | + |
|---|
| Start bp | 2094195 |
|---|
| End bp | 2097578 |
|---|
| Gene Length | 3384 bp |
|---|
| Protein Length | 1127 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 644935451 |
|---|
| Product | TonB-dependent receptor plug |
|---|
| Protein accession | YP_003092071 |
|---|
| Protein GI | 255531699 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.000499096 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAATT ATCCTTTGAA ACCTGGTGTG CTACGCTATT TTGGCCTGCC GCCTAAAATA
CTTTTAATTA TGAAACTGAT CATAATTATG CTTTTTACCT GCCTGATGCA GGTTAGCGCA
AGTTCATTTG CGCAAAGAAT CTCTCTGTCT GAAAAAAACG CCTCGCTAGA ACAAGTATTA
AAAAAAATAA AGCTTCAGAC TGGTTTTGAT GTACTTTACG GTAGCGAAGT ACTGAACCAG
GCTAAGAAAG TAAATATAAA TTTATCCAAT ATCCCTATAA ATGATGCACT GGGGCAACTT
TTTGAAGGAC AACCTTTAAA TTACCAGGTA AAGGACAACA CTATTTTTAT TACCCGAAAA
GCTCCTACCT TTCTGGAGCG CCTGGCTGAT CGCTGGGCTG CTATTGACAT TACCGGTACT
GTGCTGGATG AGAAGGGTAT ACCGCTGCCG GGGGCGACGG TGAAAGCTAA AGGCGCGAAA
ACCGCGATTA CCGATATTAA AGGCCGGTTT ATGTTGGAGC ATGTGGAAGA GGGGGCTATG
GTGATGATTT CGTATACCGG TTATGTAACC CAGGAATTGC CAGCTAAACA GGCGATGGGC
ACTATTGCGA TGAAGCTTTC GGATAATCCA TTAGATCAGG TGCAGGTGAT TGCTTATGGT
ACACAGACAC AACGTAACAG TGTAGGTAGT GTGGTTTCTA TTAAAGCTGA CGTCTTAGAA
AGACAACTGG TGAAAAACCC TTTACTTGCC CTTCAAGGGT TGGTTCCGAA TTTAGAGATT
ACACCCACAA ATGGTTTAAA TGGTGCAGGT GTTACTATAC GCCTCGGAGG CTCAAATAGT
ATTTTAAACG GAAACGATCC ATTCATTGTG ATTGACGGTG TACCTTATGC TTCTCAGACA
CTAAGCACAG CTAGTGTAGG AAGTTTAATG TTAGGGAATT CGGGTGATAG CAGGGGAGGA
TCTGGTAATC CGTTAAATTA CATTAACCCG GGAGATATAG AAAGTATAGA TATTTTAAGA
GATGCGGATG CTACTGCCAT TTACGGATCA AGGGCGGCGA ATGGGGCAAT ATTGATCACA
ACTAAAAAAG GTAAGGCAGG GACAACACAA TTCGATCTGA ACATTCAAAA TGGTTGGGGA
CAAGTAGGTA AATTTTTAAA AGTACTGAAT ACAGAACAAT ACCTGGAAAT GAGAAGGGAG
GCCTTTAAAA ATGACGGTCT TCCCATCCCA TCAATAATTA CCAATCCAAA TAATACGGAT
TATGACGTGA ATGGACATTG GGATACCAAC AGGTATACCG ATTGGCAAAA GGAACTGATC
GGCGGTACCG CCCAATATAA TAATATTGCA TTAACCATAT CCGGGGGCAA TGTGAATACC
CAATTTAGAA TATCAGGAAC CTATAATCGT ATGACGACTG TTTTCCCCGG AGAAAATGCC
AACAAATCAA GTAACCTTAG CTTTTCTTTA AGCAATACTT CGAGCGATCA AAAGTTTAGC
CTTCAGTTTT CAGGAAGTTA TATGGGGGAT GTGAACAGGT TACCCGGGGT TGATTTTACC
TATTATGGAG TAAAGTTATC ACCAAATGCT CCTGAACTTC TTAATTCTGA TGGTAGTCTG
AACTGGGCTC CTACTTTAGC AGGCATATCG AGTTTAATTG CAAACCCATT GGCTCAGCTA
GGGGCAGAGT ATAAAGCCAA AACGACCAAC TTGGTCTCAG GACTTGCTTT AAAGTATAAG
ATCTTAAATG GTTTAGAGAT AAAAACTAAT TTTGGATATA CCAAAAATCA AAATGATGAA
TTTAGCGGCG GCCCTTTGTC TATATATCCA CCAGAATATA GAGTAACGTC AAATCCGAAT
GAATTACGTA CCGCTAAGTA CTCAAATAAT AATATTGATT CCTGGATCAT TGAGCCCCAA
TTGAATTATG ATGCTGATTT TAAAGATCAT CGATTTAATT TATTAATAGG CGGTACAGCT
CAGCAAAGGT CTAGTAATGG TATTAATTTA GCTGGTTCAG GTTATACGAA TGATGCTTCG
TTAGAGGATA TAAAATCAGC GGCTACAATA GTGGCCGGGG CCTCTGTGGT TTCTGTTTAC
AAATATGTTG GCGTTTTCGG CAGGTTGAAT TACAATTTTA AGAATAAATA TGTCATTAAC
CTGACCGTTA GAAGAGACGG CAGCAGTCGT TTTGGCCCCT ATACTAAGTT TCATAATTTT
GGCTCTGCTG GTGTAGCCTG GATTTTAAGC GAGGAGAAAT TTATCAAAGA CAATCTGTCA
TTTCTAAGTT TCGGTAAGGT CAGGGGAAAC TACGGTACAA CCGGGAGTGA TCAAATCGGA
GATTATAGCT TTGTTCCAAG ATTGAATGCT ATTAGTGTTA ATGTTCCTTA TCAGGGTATC
GCCGGTTATA TCATGGGAGG TTTATTGAAT GAACATCTTG AATGGGAGGA GACGCGGAAA
TTGCAATTGG GGGTTGATCT TGGTTTTTTA AAAGATAGAA TTTTATTAAC TGCCAATTAT
TCGCGCAACA GATGTTCCAA TCAATTGTTA GATTATGATT TACCATTAAT AGCTGGTTAT
ACCTATATAA ATTATAATTT CCCTGCTACT TTGCAAAATA GGGCTATTGA TTTTAACCTT
AAAACCGTTA ATTTAAAAAA TGCTGCCCTA TCCTGGACCA GCGGTATTAA TTTAACATTT
CCTGACAATA AATTACTCTC ATTTCCAGGA ATCGAAACTT CAACTTATGT TAGTAACCTG
ATAGTTGGGG AACCTTTTAA CATACTAAAA CGTAATCCCT ATGTTGGAAT AGATCCAATG
ACAGGGGTTT TTCAGATTGC GGGTAGAAAT GGTCCAACAT CTAATGCATC TGAACCTTTT
GAACGAATAC CTATCGACAT CCAAACCGAA TATCATGGTG GTGTTTATAA TTCATTGATA
TATAGAGGTG TGCAGTTTGA TTTTTTATTT CAATTTGTTA AAAAATTAGG TGCAAATTTT
CCTTCCAATC TTCCCGGAAG ATTTAATTCA GGTGTAGGGA ATCAGCCCAT CTCTGTATTA
AATCGTTGGC AAAATCCAGG CGATATTGCA GAAAACCAGA GGTTTACGCA GAAAACAACG
CTAAGTAGTA TTTATAGTCT CATTTTGAGT AGCAATCGGT CATACGTTGA TGCTTCATTT
ATTAGGCTTA AGAATGTGTC CTTATCGTAC CAATTACCGA AAGAATGGAT AAAAAGGATG
TCACTTCAAT CCCTCAGAAT TTATACACAC GTACAAAATC TATTTACACT CACCAGGTAT
AAAGGCTTGG ATCCGGAAAC GCAAAGTTCA ACTACTTTAC CACAACTTCG AATCATTACT
TTAGGAATCC AGGCTTCACT ATAA
|
|---|
| Protein sequence | MKNYPLKPGV LRYFGLPPKI LLIMKLIIIM LFTCLMQVSA SSFAQRISLS EKNASLEQVL
KKIKLQTGFD VLYGSEVLNQ AKKVNINLSN IPINDALGQL FEGQPLNYQV KDNTIFITRK
APTFLERLAD RWAAIDITGT VLDEKGIPLP GATVKAKGAK TAITDIKGRF MLEHVEEGAM
VMISYTGYVT QELPAKQAMG TIAMKLSDNP LDQVQVIAYG TQTQRNSVGS VVSIKADVLE
RQLVKNPLLA LQGLVPNLEI TPTNGLNGAG VTIRLGGSNS ILNGNDPFIV IDGVPYASQT
LSTASVGSLM LGNSGDSRGG SGNPLNYINP GDIESIDILR DADATAIYGS RAANGAILIT
TKKGKAGTTQ FDLNIQNGWG QVGKFLKVLN TEQYLEMRRE AFKNDGLPIP SIITNPNNTD
YDVNGHWDTN RYTDWQKELI GGTAQYNNIA LTISGGNVNT QFRISGTYNR MTTVFPGENA
NKSSNLSFSL SNTSSDQKFS LQFSGSYMGD VNRLPGVDFT YYGVKLSPNA PELLNSDGSL
NWAPTLAGIS SLIANPLAQL GAEYKAKTTN LVSGLALKYK ILNGLEIKTN FGYTKNQNDE
FSGGPLSIYP PEYRVTSNPN ELRTAKYSNN NIDSWIIEPQ LNYDADFKDH RFNLLIGGTA
QQRSSNGINL AGSGYTNDAS LEDIKSAATI VAGASVVSVY KYVGVFGRLN YNFKNKYVIN
LTVRRDGSSR FGPYTKFHNF GSAGVAWILS EEKFIKDNLS FLSFGKVRGN YGTTGSDQIG
DYSFVPRLNA ISVNVPYQGI AGYIMGGLLN EHLEWEETRK LQLGVDLGFL KDRILLTANY
SRNRCSNQLL DYDLPLIAGY TYINYNFPAT LQNRAIDFNL KTVNLKNAAL SWTSGINLTF
PDNKLLSFPG IETSTYVSNL IVGEPFNILK RNPYVGIDPM TGVFQIAGRN GPTSNASEPF
ERIPIDIQTE YHGGVYNSLI YRGVQFDFLF QFVKKLGANF PSNLPGRFNS GVGNQPISVL
NRWQNPGDIA ENQRFTQKTT LSSIYSLILS SNRSYVDASF IRLKNVSLSY QLPKEWIKRM
SLQSLRIYTH VQNLFTLTRY KGLDPETQSS TTLPQLRIIT LGIQASL
|
|---|
| |