| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_1798 |
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| Symbol | |
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| ID | 8252901 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | + |
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| Start bp | 2092160 |
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| End bp | 2092726 |
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| Gene Length | 567 bp |
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| Protein Length | 188 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 644935449 |
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| Product | RNA polymerase sigma-70 factor |
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| Protein accession | YP_003092069 |
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| Protein GI | 255531697 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.00185694 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGAGTGCTT ACAGCACATA TACCGATCAG GAACTAACTG CTTTGTTAAA GAGTGGGGAT
GAGTATGCTT TTACTGAAGT TTATAATCGT TACTGGAGGG TGTTGTATGC GCTGGCCTAT
AATCGCTTAC GGGATACCCA ATCTGCTGAA GATATTGTAC ATGATGTGCT GGTAAGTATC
TGGAAGAACA GGGCAACTGC TGAGGTGGAA CACTTGAACG CTTACCTGGC CCGGGCCACA
AAATATATGG TATTTCATGT AATTAAACGT GCGCAAAAGT TTTCACATGA TGAGCATGCA
ATGGATAATG CGGAATTGGT GATAGACCAG GAAGATATAG AGGACAGATT GCATTACAAG
CGCTTATTGG AAATGGTAAA TACTGAAGTT GAAATGTTAC CCGAAAAGTG CAGGCTGGTA
TTTAAGTATA GCAGAGAAGA GCAACTTTCT GTTAAAGAGA TAGCGGAAAA GATGAATGTT
TCGACCAGTA CTGTAGAAAA CCAAATGAAC AAAGCTCTGA ACATCCTGCG TAAGAATGTA
AAAAACATTC ATTTAATACT ATTTTAA
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| Protein sequence | MSAYSTYTDQ ELTALLKSGD EYAFTEVYNR YWRVLYALAY NRLRDTQSAE DIVHDVLVSI
WKNRATAEVE HLNAYLARAT KYMVFHVIKR AQKFSHDEHA MDNAELVIDQ EDIEDRLHYK
RLLEMVNTEV EMLPEKCRLV FKYSREEQLS VKEIAEKMNV STSTVENQMN KALNILRKNV
KNIHLILF
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