| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_1778 |
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| Symbol | |
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| ID | 8252881 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | + |
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| Start bp | 2075531 |
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| End bp | 2076508 |
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| Gene Length | 978 bp |
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| Protein Length | 325 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 644935429 |
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| Product | helix-turn-helix- domain containing protein AraC type |
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| Protein accession | YP_003092049 |
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| Protein GI | 255531677 |
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| COG category | [K] Transcription |
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| COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.545321 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.0235367 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAACATA TATCCATACT TATCCCAACA GGGGGCGTAT TGGGCGGTAT TGAAATCGCC
CGCAATATGA TTGCAGAGGC CAATAATTAT GTCATCAGTA AGGGGAACGA GGCCGTGTTT
CAAATGCAGC TTGTAGGAGC AAAGAAAAAT ATTGAACTGA ACGAGCGTCA AGTCTTAATT
CGACCGGATG TTACAATAAA TTATTTAAAA CAAACCGATC TTATAATTAT TCCAGCGATC
AATGTCGATT TGGAACTCAA CAATAATCCA AATGTGCCGC TTATCAACTG GGTAAGGCAG
ATGCGTAAAC AAGGTGCTGA GGTGGCATGT CTCTGTGTTG GTGCCTTTTT GCTAGCTAAG
ACCGGGATTT TAGACGGTAA AACCTGTACA ACGCACTGGA AAGCTTCAGA GCTTTTCATC
AATCAATACC CCGAGATAAA GCTTTTAAAG GAAAAAATCA TTACGGATGA AGATGGAATA
TACTCTAGCG CCGGTGGATT TTCTATGCTA AACCTCATAG TATATCTGAT TGAAAAATAC
GCCGGCAGGG AAGTTGCCTT GTATTGTGCT AAGTTTTTCC AGGTAGATAT CGACAGGAAT
GCACAGTTGC CATTTATAAT TTTTCAGGGA CAAAAAGAAC ACAACGATAT TCAGGTTAAA
CAGGCCCAAA CATACATCGA GGAACACTAC CAACAGCGCA TTACAATAGA TCAGTTAGCA
GAGATGCTGG CAATGGGTCG CCGTAGTCTA GAAAGAAGGT TTAAAAAGGC AACTTCCAAT
ACGCTGAACG AATACATACA ACGAGTAAAA ATTGAGGCAG CAAAAAAACA ATTGGAAAGT
GGTGAAAAGA AGATTAATGA CATCATGCTG GAAGTGGGGT ATTCCGATCA GAATAGTTTC
AGGCACTCCT TCAAATTATT TACCGGGTTA CTGCCGAATG AATACCGAAG CAAATACCAT
AGCAGAATTA CTAATTAA
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| Protein sequence | MKHISILIPT GGVLGGIEIA RNMIAEANNY VISKGNEAVF QMQLVGAKKN IELNERQVLI
RPDVTINYLK QTDLIIIPAI NVDLELNNNP NVPLINWVRQ MRKQGAEVAC LCVGAFLLAK
TGILDGKTCT THWKASELFI NQYPEIKLLK EKIITDEDGI YSSAGGFSML NLIVYLIEKY
AGREVALYCA KFFQVDIDRN AQLPFIIFQG QKEHNDIQVK QAQTYIEEHY QQRITIDQLA
EMLAMGRRSL ERRFKKATSN TLNEYIQRVK IEAAKKQLES GEKKINDIML EVGYSDQNSF
RHSFKLFTGL LPNEYRSKYH SRITN
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