| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_1746 |
|---|
| Symbol | |
|---|
| ID | 8252848 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | + |
|---|
| Start bp | 2056381 |
|---|
| End bp | 2057400 |
|---|
| Gene Length | 1020 bp |
|---|
| Protein Length | 339 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 644935396 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_003092017 |
|---|
| Protein GI | 255531645 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.00146223 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAAGA ACAATTATAA AGGCGCATTA CAGCACCCAC TGGGCTCAGG TTTTAATGCT
ACCTCAACAG CGACAGAAGT TATCAAAGGC ATTGATCTGA CAGGAAAGAT CGCAATCGTA
ACTGGTGGAA ACGCTGGCAT AGGTTTGGAA ACCACAAAGA TACTTGCAGC AGCAGGCGCA
ATCGTGATTG TACCTGCCAG AGACATTGAA AAAGCAAAGA AAAATCTGGA AGGTATTTCT
AACGTTGAAA TTGAGGCAAT GGATCTCTCT AAGCCTGAAA CCATTGATAC ATTTGCCGAA
AAATTCCTTG CTTCTGGCAG GCCACTTCAT CTATTGATCA ATAATGCTGG AATCATGTGG
GTACCGTTAC AACGTGATAG CCGTGGTATT GAATCGCAAC TGGCAACCAA TTATCTGGGA
CAGTTTCAGC TAGTGGCAAG ATTATGGCCT GCGCTTAAAA ATGCCAATGG CGCACGCGTT
GTTAACGTTT CCTCACTCGG ACACCATATG GCACCCTTCA ATTTCGATGA CCCCAACTTC
GAGCATAGAG AATACCAAAC ATTGCTTGGC TATGGACAGT CAAAAACAGC CAGTAACCTG
TTTGCCCTAG AGTTAGATAA TCGTGCCCAG GCATATCAAG TAAGAGCATA CTCACTGCAC
CCTGGTTCAA TTGCCGGAAC AGAGTTAGCC AGAGATGCAG ATATGGAATT GTTCAAACAG
ATGGGCTTCT TTGATGAGCA TGGAAATATG CGCCCGGAAA TACTTGCCAG CCTGAAAACC
ATATCACAAG GTGCTGCAAC TTCCGTTTGG GTTGCAACCA GCGCATTACT TAACAACATT
GGTGGCGTTT ATTGCGAAGA TGGGGATATT GCCGAGCTTC TTTCTGAGGA CCCATCAGTA
CAAACAAACG CTAAACTGCA TCAAAGCGGT GTGCAACCGT ATTCACTGGA CGAAAGCAAT
GCCAAGCAAC TTTGGGAGCT AACTGAGGAA ATAACAGGTA TTAAATTCAA AATGAACTAG
|
|---|
| Protein sequence | MEKNNYKGAL QHPLGSGFNA TSTATEVIKG IDLTGKIAIV TGGNAGIGLE TTKILAAAGA
IVIVPARDIE KAKKNLEGIS NVEIEAMDLS KPETIDTFAE KFLASGRPLH LLINNAGIMW
VPLQRDSRGI ESQLATNYLG QFQLVARLWP ALKNANGARV VNVSSLGHHM APFNFDDPNF
EHREYQTLLG YGQSKTASNL FALELDNRAQ AYQVRAYSLH PGSIAGTELA RDADMELFKQ
MGFFDEHGNM RPEILASLKT ISQGAATSVW VATSALLNNI GGVYCEDGDI AELLSEDPSV
QTNAKLHQSG VQPYSLDESN AKQLWELTEE ITGIKFKMN
|
|---|
| |