Gene Phep_1728 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_1728 
Symbol 
ID8252830 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand+ 
Start bp2045606 
End bp2046250 
Gene Length645 bp 
Protein Length214 aa 
Translation table11 
GC content44% 
IMG OID644935380 
Productouter membrane protein 
Protein accessionYP_003092001 
Protein GI255531629 
COG category[S] Function unknown 
COG ID[COG3652] Predicted outer membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.403983 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.000467772 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCCTTTAT CTATTATTTA TCTAATCTTC AACACTATGA AAACTAAAAG TTTCTTAAAA 
TTTTCTGCAA TCCTGGTGGT TTTTGCCGGA TTAGCAGCTT GTCAGAATAC AGACAGAAGT 
GGTAATGCCC AATTGGACAG CGCCCCGGTT GGCAGCGATT CTTTGCGCAG GGCCGACAGT 
TCAGATGCGA CAAATGATGT GACCCATATG AGCAAGGTGG ATGGCGACGG AGCGGCTTTT 
ATGGATACGG CTGCTGTGGG CGGTATGATG GAGGTAGATC TGGGTAAACT GGCACTTGAA 
AAGTCTTCCA ATGCAGAGGT TAAGAAATTT GCTGCGCAAA TGGTTGCTGA TCATACCAAG 
GCCAATACGG ATCTGAAAGC GGTTGCGGCG AAGCTGGAGC ATTTGTTGCC TTCGGCTTAT 
CCGGCGGATG TGAAAGCGCA TATGGATGCG ATGAAGAAGT TAAGTGGGAA AGAATTTGAC 
AAGCATTACA TGGATATGAT GGTAAATGAT CATGTCAAAA CCCTCGATCT GTTCAGATCT 
GCAAGCAGCT TAAGAGGTGA GATTAAAGAT TTTGCTGCAG CTACACTTCC GGTTTTGGAA 
AAACACCATC AAATGGCTAA GGAAATAAAT GCATCGCTGA AATAA
 
Protein sequence
MPLSIIYLIF NTMKTKSFLK FSAILVVFAG LAACQNTDRS GNAQLDSAPV GSDSLRRADS 
SDATNDVTHM SKVDGDGAAF MDTAAVGGMM EVDLGKLALE KSSNAEVKKF AAQMVADHTK 
ANTDLKAVAA KLEHLLPSAY PADVKAHMDA MKKLSGKEFD KHYMDMMVND HVKTLDLFRS 
ASSLRGEIKD FAAATLPVLE KHHQMAKEIN ASLK