| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_1706 |
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| Symbol | |
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| ID | 8252808 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | + |
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| Start bp | 2021730 |
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| End bp | 2023913 |
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| Gene Length | 2184 bp |
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| Protein Length | 727 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 644935358 |
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| Product | glycoside hydrolase clan GH-D |
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| Protein accession | YP_003091979 |
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| Protein GI | 255531607 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3345] Alpha-galactosidase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.499482 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0124304 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATATCC GTTTACATAT AAATAAATAT ATCTCTTGTT TTTTGTTGCT TTTTACAATG
GGTTTGAATG CCATTGCACA GCAGGACAAA CAAATCATTG TTGAAACAAA ACATACATCG
CTCATTTTTA CCATCTCATC CGGACAAAAG CTTTATCAAA GTTATCTTGG ACAAAAACTG
ATCAATCACA GCGATGAGGG CCTCTTAAAA TCAACCCGTC GTGAAGCTTA TATCGGTGCT
GGTATGGGTG ACTTATTTGA GCCTGCAATC CGTATGGTAC ACAACGATGG CAATCCCTCG
CTGGATTTAA AGTATGTTGC ACATAAAACT GACAAACAGA ATGATAATGT AGCTACTACA
TCCATAATAC TTAAAGATCC ACAATATCCG GTACAGGTAG TACTCCATTT TACCGCATAT
TTTAATGAAG ATATTATCAA GGAATGGACA GAAATAAAAC ACAACGAGAA AAAGCCGGTC
ACTTTAACCA ATTATGCTTC TTCTATGTTG CATTTTGATG CGTCTAAATA TTGGTTAAGC
CAGTTTGACG GGGATTATAT GACAGAAATG AGGATGAAGG AAAGCCAGTT GACTACAGGT
ATAAAAATAC TGGATAGTAA ACTGGGGACA CGTGCGCAAA TGTATCGTTC GCCTTGCTTC
TACCTTTCTT TAAATAAACC TGCTGATGAG AACAATGGTG AACTGATTGC GGGCACGTTG
GCCTGGTCTG GTAATTTTCA ATGTGCATTT GAAATTGATC AGCAAAATAG TCTGCGGATG
ATTACCGGAA TGAACCCTTA TGCTTCCGAA TATAAATTGC AGCCGGGTAA AACTTTTGAA
ACCCCTGCTT TTATATTTAC CTATACCAAA AAGGGGAAAG GCGAAGCCAG CAGAAACCTG
CACCGCTGGG CCAGGAATTA TGGCGTACTG GATGGCAATA AACCGCGGCT AACACTTTTA
AACAATTGGG AAGCTACACA CATGGATTTT AACCAGGATG TACTGGTTGA GCTCTTTGAC
GGTGCAAATA AACTGGGGGT GGATCTCTTT TTACTGGATG ACGGCTGGTT TGGTAACAAA
TATCCCCGTG ATGCGGATAA AACGGCATTG GGCGACTGGC AGGTAGACAA GAAAAAACTG
CCAAGCGGAA TTGGCTACCT GGTTACTGAA GCTGGTAAAA AAAACCTGCA GTTTGGGATA
TGGCTGGAGC CTGAAATGGT GAGCCCGAAA AGCGAATTGT ATGAAAAGCA TCCGGATTGG
ATATTGAAAT TGCCAAACAG AGAAGAGGCT TACTCACGCA ACCAGCTGGT ACTGGATTTG
ATCAATCCAA AAGTACAGGA CTTTATATAC GATATGGTGA GTGATCTGCT GACTAAAAAC
CCGGGTATTG CCTTTATTAA ATGGGATTGT AACCGTATGC TGACCAATAC GTATTCGCCT
GCTTTAAAAG AGAATCAGGG TAACCTTTTC ATAGATTACA ATCGGGCCTT ATATACTATT
TTGGAGCGTT TAAGAAAAAA ACATCCGCAT TTGCCTATCA TGCTATGTGC CGGTGGAGGT
GGTCGGGTCG ACTATGGCGG ACTGAAATAT TTTACAGAGT TTTGGCCAAG CGACAATACC
GATGGCCTGG AGCGGGTATT TATACAATGG GGTTACCTCA ACTTTTTCCC GGCCTTAACT
GTCTCCAGCC ACGTAACTTC TATGGGTAAA CAGTCGTTAA AGTTCCGTAC AGACGTGGCC
ATGATGGGTA AAATGGGTTA TGATATCAGG GTTAAAAATC TGACAGAACA GGAAATTAAA
TTCAGTAACC AGGCGGTTAA AACTTATAAA AAGATCAGTG ATGTCATCTG GTTTGGTGAT
CTGTACCGTT TAATCTCTCC GTATGAGGAG AACAGGGCAG TTTTAATGTA TGTGGATGAG
CCTAAAAACA AAGCCGTACT TTTCAATTAC CTGCTTAATT TCAGGCGTAA AGAATATATG
GGGAAGGTGC TTTTAAACGG CCTTGATCCA TTAAAGCGTT ATCAGATTAA GGAAGTTAAT
TTATTGCCGG ATACGAAATC GACCTTTCCA GATGATGGAA AAGTATTTAG CGGCGACTAC
CTGATGAATA TTGGATTAAA CCTCTCATCT GGTAAAATCA GTCCCCTAAG TAGTTCTGTT
TTTGAAATTG TTGCCCAAAA CTAA
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| Protein sequence | MDIRLHINKY ISCFLLLFTM GLNAIAQQDK QIIVETKHTS LIFTISSGQK LYQSYLGQKL
INHSDEGLLK STRREAYIGA GMGDLFEPAI RMVHNDGNPS LDLKYVAHKT DKQNDNVATT
SIILKDPQYP VQVVLHFTAY FNEDIIKEWT EIKHNEKKPV TLTNYASSML HFDASKYWLS
QFDGDYMTEM RMKESQLTTG IKILDSKLGT RAQMYRSPCF YLSLNKPADE NNGELIAGTL
AWSGNFQCAF EIDQQNSLRM ITGMNPYASE YKLQPGKTFE TPAFIFTYTK KGKGEASRNL
HRWARNYGVL DGNKPRLTLL NNWEATHMDF NQDVLVELFD GANKLGVDLF LLDDGWFGNK
YPRDADKTAL GDWQVDKKKL PSGIGYLVTE AGKKNLQFGI WLEPEMVSPK SELYEKHPDW
ILKLPNREEA YSRNQLVLDL INPKVQDFIY DMVSDLLTKN PGIAFIKWDC NRMLTNTYSP
ALKENQGNLF IDYNRALYTI LERLRKKHPH LPIMLCAGGG GRVDYGGLKY FTEFWPSDNT
DGLERVFIQW GYLNFFPALT VSSHVTSMGK QSLKFRTDVA MMGKMGYDIR VKNLTEQEIK
FSNQAVKTYK KISDVIWFGD LYRLISPYEE NRAVLMYVDE PKNKAVLFNY LLNFRRKEYM
GKVLLNGLDP LKRYQIKEVN LLPDTKSTFP DDGKVFSGDY LMNIGLNLSS GKISPLSSSV
FEIVAQN
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