| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_1702 |
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| Symbol | |
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| ID | 8252804 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | + |
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| Start bp | 2014770 |
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| End bp | 2017403 |
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| Gene Length | 2634 bp |
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| Protein Length | 877 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 644935354 |
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| Product | DNA ligase D |
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| Protein accession | YP_003091975 |
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| Protein GI | 255531603 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG3285] Predicted eukaryotic-type DNA primase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.170827 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.00786599 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGGACTTG ACAAGTATAA CCATAAACGC GATTTTAACA AAACTGCTGA GCCAAAAGCT
GGCAAATCTA AAGATGCTGA TCAATTACAT TTTGTAATCC AGAAACATGA CGCTTCCCAC
CTTCATTACG ATTTCAGACT GGAAATGGAA GGCGTGTTAA AAAGCTGGGC AGTACCAAAA
GGACCGTCAA CAGACCCTAA GGTGAAACGT CTGGCCATGA TGGTGGAGGA TCATCCGTAC
GACTATAAAG ATTTTGAGGG CATAATTCCT AAAGGAGAAT ATGGTGGTGG AACAGTGATT
GTTTGGGATG AGGGTACTTA TGAACCTATT GAAGAAATTA AAGGAAAAAA AGCTCAGGAT
AAGTACTTGC GGAAACAGCT GAAGGAAGGA TCGCTGAAAA TAAAACTGCA GGGCAAAAAA
CTAAAAGGGG AATTTGCCCT GGTTAAAACC CGCGGCATGG GCGAGAATGG ATGGTTGCTG
ATCAAGCATA AGGATGATTA TGCAGCTACG GCAGATATTA CTAAACAGGA TAAATCAGTG
CTATCCGGCA AAACCATTGC TGCCATGGAA CAGACCAGTG ATAAAGTATG GCAGCATGGT
CATGAGGAAA AACTGGAAAA AGCACCCAAA AAAAAGATAC CCATAGGCAT GAAACCCATG
CTGGCAACGC TGGTTGACGA GCCATTTGAT GATCCGGACT GGGTTTATGA GGTGAAATGG
GACGGCTACA GGGCGCTCGG CTTCAGCAGG AAAAACGGTG ATGTACAATT GCTTTCACGC
AATAACAAAC CATTCAATGA AAAATTTTAC CCCATTTACG AGGTTATGCA AAACTGGAAA
ATTGATGCCG TTGTAGATGG GGAAATACTC GTGCTGAATG ACAAAGGAGT CTCCAACTTT
GCTGAACTGC AAAACTGGCG CAGCGAAGCT GATGGCGAAC TGGTGTATTA CGTTTTTGAC
CTGATCTGGT ATGATGGAAA AGACCTTACC GGCTTAAGCT TATTGCAGCG GCAGGCAATT
TTAAAAAGCA TATTGCCCCA GGACGATGAC CGCATTCGCC TGAGTAAGGT ATTTACCGCG
GAAGGAACCG AGTTTTTTGA GGCTGCCAAA AAAATGGGAT TGGAAGGCAT TATTGCCAAA
AAAGGAAGCA GTACCTATAC ACCGGGCAAC CGAAGTACCG ACTGGCTGAA AATTAAAATT
AACAAAAGGC AAGAGGTGGT GATAGCGGGT TTTACCAAAA ATAAGGATAG TTCAAAACAA
TTCAGTTCTT TACTGCTGGG TGTTTATGAA AGGGGGCATC TGCAGTATGT AGGTAAGGTA
GGTACGGGCT TTTCTGATCA GTTGCAAAAG GAAATGATGA AGCAGTTTGA ACCATTAATG
ATTACTAAAA GTCCTTTTGA TGAAATTCCG GATGTGAACA AGCCTTCCCG TTTTCGTCCG
AACCCACCTC AGGCAAAGGC AACCTGGTTA AAACCTGAAC TGGTTTGTGA AGTGGCTTAT
GCAGAAGTCA CTTCAGATGG GGTATTCAGA CATCCTTCTT TTCAGGGCAT GCGTATAGAT
AAGAAAGCAA AAGACGTAAT AAGGGAGGCT GCAGTAGAAA CGAAAGCTGT TGTAAATTTA
GATATGGAGA CAGATGACAT GGCTAAAACA AATAAACATG CAAAGGCGAT TAAGCCGCCC
AAGGCTGCTG CCCGCAAAAC TTTGCTGAAC CCTAAAGATG AAACCCAGGT TCGTAAAGTT
TGCGGACATG AACTGAAATT TACTCATTTG AGCAAAGTAT ACTGGCCGGA AGATCAGGTA
ACCAAAAGAG ACCTGTTTAA TTATTATTAC CAGGTTGCGG AGTACATATT GCCCTACCTG
AAAGACCGGC CCATGTCATT GAATCGCTTT CCTGGTGGTA TTAATGGTCA GAGTTTTTAT
CAGAAAGATG TAAAAGGAAA GGCACCGGAC TGGGCCAGAA CTTTTCCTTA TACTACGGGT
GAGGGCGAAG CTAAAGAATA CCTGGTGGGG GATGATGAGG CCACCTTACT TTGGATGGTC
TCTCTTGGCT GCATTGAAAT GAATCCCTGG TTTAGCAGGG TAAAATCGCC TGACAACCCG
GACTATTGTG TGATCGACCT TGATCCGGAT AAGCAGAATT TTGATCAGGT TGTAGAAGCG
GCCCTTACGG TAAAGGAGGT TTGCGACCAG ATGGATGTGC CAAGTTTTTG TAAAACATCC
GGTTCTACCG GTATCCACAT TTATATCCCC CTTGCTGCAA AATACAGTTA TGACCAATCG
CAGATGTTTG CAAGGATCAT TGTCAGTCTA GTCCATCAGC GGATTCCGGA ATATACCAGC
CTGGAACGGA TGATTCCTGC GCGCAAGGGA AAAATGTACC TCGACTTTTT GCAAAACCGT
CCGGGGGCGA CCATTGCCGG CCCTTATTCA TTAAGACCAA AACCAGGTGC AACGGTTTCT
ATGCCCCTGC ATTGGGAGGA AGTAAAGCCT GGTTTAAAAA TGACTGATTT TACTATTTTT
AATGCGCTGG AACGTTTAAA AAGTGAAGGT GATTTTTTTA GAGGCGTACT GGGAAAAGGC
ATTGATCTGG AAAAAACGAT TCATAAAGCC AAAGGTGTTT TTGGCAATAG TTAA
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| Protein sequence | MGLDKYNHKR DFNKTAEPKA GKSKDADQLH FVIQKHDASH LHYDFRLEME GVLKSWAVPK
GPSTDPKVKR LAMMVEDHPY DYKDFEGIIP KGEYGGGTVI VWDEGTYEPI EEIKGKKAQD
KYLRKQLKEG SLKIKLQGKK LKGEFALVKT RGMGENGWLL IKHKDDYAAT ADITKQDKSV
LSGKTIAAME QTSDKVWQHG HEEKLEKAPK KKIPIGMKPM LATLVDEPFD DPDWVYEVKW
DGYRALGFSR KNGDVQLLSR NNKPFNEKFY PIYEVMQNWK IDAVVDGEIL VLNDKGVSNF
AELQNWRSEA DGELVYYVFD LIWYDGKDLT GLSLLQRQAI LKSILPQDDD RIRLSKVFTA
EGTEFFEAAK KMGLEGIIAK KGSSTYTPGN RSTDWLKIKI NKRQEVVIAG FTKNKDSSKQ
FSSLLLGVYE RGHLQYVGKV GTGFSDQLQK EMMKQFEPLM ITKSPFDEIP DVNKPSRFRP
NPPQAKATWL KPELVCEVAY AEVTSDGVFR HPSFQGMRID KKAKDVIREA AVETKAVVNL
DMETDDMAKT NKHAKAIKPP KAAARKTLLN PKDETQVRKV CGHELKFTHL SKVYWPEDQV
TKRDLFNYYY QVAEYILPYL KDRPMSLNRF PGGINGQSFY QKDVKGKAPD WARTFPYTTG
EGEAKEYLVG DDEATLLWMV SLGCIEMNPW FSRVKSPDNP DYCVIDLDPD KQNFDQVVEA
ALTVKEVCDQ MDVPSFCKTS GSTGIHIYIP LAAKYSYDQS QMFARIIVSL VHQRIPEYTS
LERMIPARKG KMYLDFLQNR PGATIAGPYS LRPKPGATVS MPLHWEEVKP GLKMTDFTIF
NALERLKSEG DFFRGVLGKG IDLEKTIHKA KGVFGNS
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