| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_1550 |
|---|
| Symbol | |
|---|
| ID | 8252652 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | + |
|---|
| Start bp | 1834860 |
|---|
| End bp | 1837334 |
|---|
| Gene Length | 2475 bp |
|---|
| Protein Length | 824 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 644935204 |
|---|
| Product | primosomal protein N' |
|---|
| Protein accession | YP_003091825 |
|---|
| Protein GI | 255531453 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1198] Primosomal protein N' (replication factor Y) - superfamily II helicase |
|---|
| TIGRFAM ID | [TIGR00595] primosomal protein N' |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.764668 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.503728 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGCTG AACTGCTGGA ATTCAGTGAA AGGGAAACCT TGTTTGTAGA GGTGATTCTG
CCTCTGTCGC TGGCTAAAAA CTATCTGTAT CGTGTGCCAT TCGACTTGAA CAGTGAAGTG
GCCATTGGCA AAAGGGTGGT GGTGCAGTTT GGAAAGAACA AGATTTATAC CGCCTTAATT
AAAACCATTA GCCAAACCGC CCCCAGGCTT TATCAGGCCA AATACATTAT TGATGTGGTA
GATGAGCAAC CTGTGATTAC CACTTTACAA TTGCAGCTGT GGGACTGGAT GACAGGTTAT
TACCTTTGCA ATGAAGGGGA TGTAATGTCG GCCGCTCTTC CAACCGGATT AAAACTGGCA
AGTGAAACCA TTATTGTGCT GAAAGAAGAG GCGTTGCAGG AAAAGGTTTT AACAGAAAAG
GAACGTATTC TGATGGATGC TTTGAATCAT CAGAAAAGGC TTACTATAGC TGATGTTTCT
GCTTTACTTG GGCAAAAAAC AGTATATCCC ATCATCAATA CCCTGCTGGA AAAAGCATTG
GTATATGTTG CTGAAGAAGT GGTAGAGAAA TACAGACCAT TGCTAAAATC TTTTGTGGCA
TTAAATGCTT TTTATAGGGA AGAAGAAAAT TTAAAGCAGT TGTTTACCAT TCTGGAACGT
GCACCCAAAC AACTGAATGC GCTGCTTACC TTTATCAAGT TGTCCCGACA GCAAAACTTG
GTTTCAAAAT CACAATTACT GGAAGAGAGC GATTGCGGAC AGGCGGCTTT TAAAACACTG
CTGGATAAGG AAATATTTAC GGTCGAAAAA AGACCGGTGA GCCGCTTAAA AGATAATGAT
GAGGACTTTG TACTGAACTT TGAACTGAGT GCAGCTCAGC AACAGGCTTT GACCGGGATT
GAAATGGAAT TTGAGCGGAA AGATGTGGTA TTGCTGCATG GCATTACTGC TTCCGGAAAA
ACCCAGATCT ATATTAAACT GATTGAAAAG GCCATTGAGC AGGGCGGGCA GGTTTTGTTT
TTATTACCCG AAATTGCTTT GACCACTCAG ATTGTTCAGC GCATACAGCG TTATTTTGGG
GATGCTATTG GGGTTTATCA TTCTAAATTT AACAACAATG AGCGGGTCGA GATCTGGAAT
AAAGTATTGA ACGGGAAGTA CCGGGTAGTA CTTGGGGCCA GATCAGCAGT GTTTTTGCCT
TTTAAAGAGC TGAAATTGAT CGTGGTTGAT GAGGAACATG AATCCTCTTA TAAGCAGCAG
GAACCCTCGC CAAGGTACCA GGCCAGAGAT GTGGCTGTTT ACATGGCCCA TTTGCACCAG
GCTAAAACCG TACTGGGCTC GGCCACGCCA TCCATAGAAA GCTATTACAA TGCCATTAGC
CAAAAATATG GTCTTGTTAC TTTAAATGAA CGCTTTGGTG GAGTAGAATT GCCTTTGCAT
GAAGTGGTGA GCATTTCGGA AGAAACGAAG AAAAAAAAGA TGGTTTCTTA TTTTTCCGGT
AAACTGATTG AAGGGATTAG CCTTGCCCTG GAACAAAAAG AACAGGTAAT CCTGTTTCAG
AACCGCAGAG GCTATGCAAC TATACTGATC TGTGCCACTT GTGGTTATGC ACCCAAATGT
GTAAACTGTG ATGTTTCTTT AACCTACCAT AAAACCAGCG GTAAATTGCA CTGCCATTAT
TGCGGATATC ATCAGAGCAG CATCAATATA TGTCCGGCCT GTGGTTCTGT ACACATAGAA
CAGAAAGGCT TTGGCACTGA AAGGGTAGAG GAAGAACTGA GCCTGGTTTT CCCGGATGCT
AAAATTGCCC GGCTGGATGT GGACAGCACA CGTACCAGGA ATGGCCTGCA GCAGCTTATT
TCAGATTTTC AGGAAAAGAA AACGGATATC CTTATTGGTA CACAAATGGT GGCCAAAGGA
CTTGATTTTG ATAATGTTAC CCTGATCGGG GTAATCAATG CAGATACTTT ACTGAATTAT
CCTGATTTCA GGGCCTTTGA ACGGAGTTAC CAGCTGCTCG CACAGGTAGC AGGCAGGGCA
GGAAGAAGAG ACAAGCAGGG AAAAGTAATT ATCCAGGCTT ATGACGATTC GCATCGCATC
ATCAGACAGG TGATGGAGAA CCAGTATCTC GAAATGTACA AGGACGAACT GGCAGAGCGT
CTGCAGTTTC ATTATCCACC ATTTACTAGG CTTATCTTTG TCAATATCAA ACATAAAGAT
CAGGACCTGT TAAATATGGC TGCACAGCGT TTTGCAACGA TACTAAGGGC GCAGTTAGGG
CCAAGGGTTT TAGGGCCCGA GCAGCCTATG GTGGCCCGGA TCAGGAATTA CTACATTAAG
CAGGTAATCA TTAAAACTGA TAAAGATACC TCTGTCCAGA AAGTTAAATC TGTATTAAAA
AATACCATCC TCGACTTTCA GTCCGAAAAA GAATACCGTT CCGTAAACAT CCAGGTAGAC
GTGGATCCCT ACTAG
|
|---|
| Protein sequence | MAAELLEFSE RETLFVEVIL PLSLAKNYLY RVPFDLNSEV AIGKRVVVQF GKNKIYTALI
KTISQTAPRL YQAKYIIDVV DEQPVITTLQ LQLWDWMTGY YLCNEGDVMS AALPTGLKLA
SETIIVLKEE ALQEKVLTEK ERILMDALNH QKRLTIADVS ALLGQKTVYP IINTLLEKAL
VYVAEEVVEK YRPLLKSFVA LNAFYREEEN LKQLFTILER APKQLNALLT FIKLSRQQNL
VSKSQLLEES DCGQAAFKTL LDKEIFTVEK RPVSRLKDND EDFVLNFELS AAQQQALTGI
EMEFERKDVV LLHGITASGK TQIYIKLIEK AIEQGGQVLF LLPEIALTTQ IVQRIQRYFG
DAIGVYHSKF NNNERVEIWN KVLNGKYRVV LGARSAVFLP FKELKLIVVD EEHESSYKQQ
EPSPRYQARD VAVYMAHLHQ AKTVLGSATP SIESYYNAIS QKYGLVTLNE RFGGVELPLH
EVVSISEETK KKKMVSYFSG KLIEGISLAL EQKEQVILFQ NRRGYATILI CATCGYAPKC
VNCDVSLTYH KTSGKLHCHY CGYHQSSINI CPACGSVHIE QKGFGTERVE EELSLVFPDA
KIARLDVDST RTRNGLQQLI SDFQEKKTDI LIGTQMVAKG LDFDNVTLIG VINADTLLNY
PDFRAFERSY QLLAQVAGRA GRRDKQGKVI IQAYDDSHRI IRQVMENQYL EMYKDELAER
LQFHYPPFTR LIFVNIKHKD QDLLNMAAQR FATILRAQLG PRVLGPEQPM VARIRNYYIK
QVIIKTDKDT SVQKVKSVLK NTILDFQSEK EYRSVNIQVD VDPY
|
|---|
| |