| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_1485 |
|---|
| Symbol | |
|---|
| ID | 8252586 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | + |
|---|
| Start bp | 1763227 |
|---|
| End bp | 1764000 |
|---|
| Gene Length | 774 bp |
|---|
| Protein Length | 257 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 644935139 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_003091761 |
|---|
| Protein GI | 255531389 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.228299 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.622762 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATAAAT ATTTAAAATA TACCCTGTAT GCCTGGCTTT TGCTTTTGGC CATGCCCTTA
CTTTCATCGG CAAATGAACA GCCGGAAGCA TTATTAAAAA AAGGAAATTC GGCTTATGCA
AAGGAACAGT ATAAAGAGGC CCTTGCCGCC TATCAGCAGG CATTGGATGC AGGTTATGAG
TCGGTAGCAC TCTATTTTAA CACAGCCAAT GCTTATTATA AACTGGCTGA AATGCCCGCT
GCAATTTTAA ACTACGAAAA AGCGGCTAAA CTGGCTCCGG GGGATGAGGA TATACAACTG
AACCTTAAAC TTGCCAATTT AAAAATAACT GACAGGATAG AAGATGTTCC TGAGTTTTTT
CTCACCACCT GGTGGAAATC CTTTATATTT TCCTTTTCTG CAAAAACATT GGCAGTATTT
AATGTAACCA GCTTTATTGT TGGTTTTGTG TTGCTCATTG CCTATCTGTT TTTAACTGCG
GTAGGGCATA AAAAACTGGC TTTTTATGCA GGTATAATTG TTTTATCCCT TGGTCTGATC
AGTTTTATTG TAGTCAATGT CCAATCCGGT TATCTGAACG GAAAATCTCA GGCCATTGTT
TTTAGGGGTG CTGCTGATGT GAAAAGCGGC CCTGATGCGA AACAAAAAAC TTTATTTGTG
ATCCATGCGG GCACCAAAGT CAGCATTAAA GCAAATAACA ATGGCTGGAT CAATGTGGTG
CTTTCGAACG GTAATTCAGG CTGGATTGCG GCTTCCGATG TAAAAGAAAT ATAA
|
|---|
| Protein sequence | MHKYLKYTLY AWLLLLAMPL LSSANEQPEA LLKKGNSAYA KEQYKEALAA YQQALDAGYE
SVALYFNTAN AYYKLAEMPA AILNYEKAAK LAPGDEDIQL NLKLANLKIT DRIEDVPEFF
LTTWWKSFIF SFSAKTLAVF NVTSFIVGFV LLIAYLFLTA VGHKKLAFYA GIIVLSLGLI
SFIVVNVQSG YLNGKSQAIV FRGAADVKSG PDAKQKTLFV IHAGTKVSIK ANNNGWINVV
LSNGNSGWIA ASDVKEI
|
|---|
| |