Gene Phep_1439 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_1439 
Symbol 
ID8252539 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand
Start bp1710691 
End bp1711713 
Gene Length1023 bp 
Protein Length340 aa 
Translation table11 
GC content41% 
IMG OID644935092 
Productglycoside hydrolase family 25 
Protein accessionYP_003091715 
Protein GI255531343 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3757] Lyzozyme M1 (1,4-beta-N-acetylmuramidase) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGAAGA AGCATCCGGA TGTCGACCAG GAACATTGGC TTTTTTATTT TGGGAGCAGA 
CCTGTATGGC GTATTCAGAG TTTATTGTAT TTTTGCAGGA TCATGCCTCC AGCACCTAGA
AAAACACCTG CTTCCAGAAA ATCTACTTTC CGTCAAACTT ATGAATCAGA TGCATCAGGC
CGTCCTCGAA GAAAAACAAC TCCAAGAAAG AAAGTTGTAA AAAAAAGAAA GCCATGGCCG
GTAGGTCTTA AGTTTTTGAT AGCTGCACTA TTGCTGATTT TGCTTTCCCC ATTCTATTAC
GGATATATTA TTAAAGGTTT TTCTTCCACC TGGCGATGGA TAAAAGACCT GGGCGAAGAT
CCCAGTTACC GTACTTACAG CAGCTTTGAC ATCAGGATAC CCAAAGGTTT TGGTATTCAT
GGCATTGATG TTTCTTACTA TCAGGGCAAA ATAGATTGGA AACAGGTTAA GGCCATGAAG
GAAGATGATG TTAAGATTGA TTTTGCATTT ATAAAGGCCA CTGAAGGTTT GTTTAAAGTA
GATCCTTATT TTCAGCGGAA TTGGCGTGAA GCACCAAAGG CCGGGGTTGT TTGCGGCGCT
TACCATTATT TCAGGCCGCA AAAACCAGGT GAATGGCAAG CTAAGTTCTT TTTGCAGACC
GTTAATTTTG AAGCTGGAGA TTTGCCGCCT GTTGTTGATA TAGAAGAACT GGATGGTGTA
CCGGCCTCAA AAATGAGGGT TCAGTTAGCC GGATTCTTAA AACATATTGA AAAGAAAACT
GGTGTTAAAC CCATCATTTA TACAGGCTTG TCTTTTTATA AGGACTATCT TCGGGGATAT
TTTGATGCAT ATCCACTATG GATCGCACAC TATCATCAGC CAAAATTAAA AGTTAGTGAG
GCCACAAACT GGCACTTCTG GCAGCATTCT GATAAAGCTA AAATCTCAGG GATCAACCAT
GTAGTTGATT TTAATGCATT TAATGGGGAC AGCCTGGCAT TTGACCGCCT GCTGATCAAA
TAA
 
Protein sequence
MLKKHPDVDQ EHWLFYFGSR PVWRIQSLLY FCRIMPPAPR KTPASRKSTF RQTYESDASG 
RPRRKTTPRK KVVKKRKPWP VGLKFLIAAL LLILLSPFYY GYIIKGFSST WRWIKDLGED
PSYRTYSSFD IRIPKGFGIH GIDVSYYQGK IDWKQVKAMK EDDVKIDFAF IKATEGLFKV
DPYFQRNWRE APKAGVVCGA YHYFRPQKPG EWQAKFFLQT VNFEAGDLPP VVDIEELDGV
PASKMRVQLA GFLKHIEKKT GVKPIIYTGL SFYKDYLRGY FDAYPLWIAH YHQPKLKVSE
ATNWHFWQHS DKAKISGINH VVDFNAFNGD SLAFDRLLIK