| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_1381 |
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| Symbol | |
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| ID | 8252481 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | + |
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| Start bp | 1641139 |
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| End bp | 1641744 |
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| Gene Length | 606 bp |
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| Protein Length | 201 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 644935034 |
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| Product | RNA polymerase sigma-70 factor |
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| Protein accession | YP_003091657 |
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| Protein GI | 255531285 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.57599 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.201536 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | TTGAAACTAC ATAAACCTGA TTTAACTTTG GTGGATGAAA AAGAACTCGT TGCCCTTTTA
CAAAAGGGCG ATAAAGGTGC CTTTGGGGAA TTATACCATC GCTATAAACG GAAATTATAT
TACAATTTTC GGAAACTGCT GAAATCCGAA AGCCAGGCAG AAGAATTGCT GCAGCAGCTG
TTTGTAAAAA TATGGGAAAA TCGCCTTTCA CTAGATCCAG ATAAAGTATT TAAGGCTTAT
TTATTCCGAA TTGCCGAGAA CCTGGTCTAT GATTTTTTCA GAAAGGCAAG CCGTGATAAA
AATATGGGGG CAATTTTGAT GACCGTTGCG ACGGAAAACT ACTCGCATAT TGAAGAGGCT
ATTTATAGCA AAGAAAGAGA AGCTCTTATC AACCGGGCCG TAGCATCCCT GCCACCTCAA
CGCCGTCACG TTTTTACCCT TTGTAAACTG GAAGGCAAAA CTTACGAGGA AGTTAGCGTA
GAATTGGGGA TATCTACCTC AACGATTAAT GATCATATTG TTAAGGCAAC ACGTTCTGTT
AGAGAATATC TTTTCGTGTC TAAAGAGTTT GCACTGCTGT TTTTGCTGGC ATTTTTCATT
AAATAA
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| Protein sequence | MKLHKPDLTL VDEKELVALL QKGDKGAFGE LYHRYKRKLY YNFRKLLKSE SQAEELLQQL
FVKIWENRLS LDPDKVFKAY LFRIAENLVY DFFRKASRDK NMGAILMTVA TENYSHIEEA
IYSKEREALI NRAVASLPPQ RRHVFTLCKL EGKTYEEVSV ELGISTSTIN DHIVKATRSV
REYLFVSKEF ALLFLLAFFI K
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