| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_1279 |
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| Symbol | |
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| ID | 8252379 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | + |
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| Start bp | 1511690 |
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| End bp | 1512280 |
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| Gene Length | 591 bp |
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| Protein Length | 196 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 644934934 |
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| Product | RNA polymerase sigma factor, sigma-70 family |
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| Protein accession | YP_003091557 |
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| Protein GI | 255531185 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.638979 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAATATGC CGGAAAAAAC AGAACTGAAA GGTGGACTTG CCAAGACCAA GGCACAGGAA
ATGCTTTTTA GTGAACTGTT CCGGACTTAC GAACACCCAC TTTATACGCT GGCATTGCGT
TTGTCAAAAG ATGATTTCGT GGCAAAGGAT ATCATTCAGG AAGTTTTCCT GACTTTATGG
ACAATGCGGG AAAAACTACA CGAGATCAAC AATATTGAAG CTTATCTTTT CCGGATTACA
AGATTTAAGG TAATTAAGTA TTTACGTAAA GTTTCGGCCG ATGACCGCTT AAAAGAAAAG
ATCTGGATCG CTTTAAAAGA CCTGGAGGAA GATGGTGATG CAAGAATAGA GGCTCGTGAA
TTTGATTCCA TCCTGATTTT GGCCATAGCG CAGCTTCCTG CTAAAAGAAA ACAAGTGTAC
CTGTTAAAAA ATACTGAGGG CAAAACGTAT AAAGATATTG CCCATGAGAT GAAAATATCA
CAGCACACCG TAAAAAACCA TTTGTCTTCC GCCAGTGAAG CCATCCGCAA ATTTTTTGAC
CTTACCTTTA AAGCCATAGT GGTTGTGCTC ACGACCTTCT GGAATATGTA A
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| Protein sequence | MNMPEKTELK GGLAKTKAQE MLFSELFRTY EHPLYTLALR LSKDDFVAKD IIQEVFLTLW
TMREKLHEIN NIEAYLFRIT RFKVIKYLRK VSADDRLKEK IWIALKDLEE DGDARIEARE
FDSILILAIA QLPAKRKQVY LLKNTEGKTY KDIAHEMKIS QHTVKNHLSS ASEAIRKFFD
LTFKAIVVVL TTFWNM
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