Gene Phep_1278 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_1278 
Symbol 
ID8252378 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand
Start bp1510548 
End bp1511306 
Gene Length759 bp 
Protein Length252 aa 
Translation table11 
GC content36% 
IMG OID644934933 
Producthelix-turn-helix- domain containing protein AraC type 
Protein accessionYP_003091556 
Protein GI255531184 
COG category[K] Transcription 
COG ID[COG2207] AraC-type DNA-binding domain-containing proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.711886 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACAATG ATTTGCATTA TGAAATCATA AAACCCCACA AACCGCTTTC GGATTTTGTA 
GATAGTTTTT GGTTTTTGCA CAATCAATCT GACAGCAATA AAGAAACTAC AGGATTGCCC
GATGGACGCG TTGATTTATT CCTTTTTCAA TCGCCCACAG AACCTTTCCG TATCGCACTT
CTTGGCTTGG GGACAGCACA ACACGAATCA GCTGTTATAC CTGCCAATGG ATTGATGTTT
TCCATTAGTT TTAAATTACT TGCGATAGAA TATATTTTTC ATGACACCAT TTCAGACATC
GTAAATAATG GGAAATTATT ACCCGAAGGT TTTTGGGGCT TTACAAAAGA TGACTTACAG
GATTTTGACC TTTTTGTAGA AAAAGCTACG AAAAAAATCC AATCGCTTTT GCCGAAAGAT
ATTGATAAAC GCAAACTCAA ATTGTTTGAA CTCATTTACG TAGGAAAAGG TGCTGTTACA
GTAAAAGAAC TTTCCGAAAA AGTATTTTGG AGCAGCCGCC AAATCAACCG TTATTTCAAT
CAGCAATTCG GTATTTCCCT GAAAACATAT TGCAACATTT TAAGGTTTAG GGCGTCGCTG
GAACACATTG CACAAGGAAA ACTTTTTCCT GAAGAGAATT TTACTGACCA AAATCACTTC
ATCAAAGAAA TAAAGAAATT TTCGGGCGTA GTACCGAAAG AATTATTTAA AAATAAAAAC
GACCGATTTA TACTATTATC AACGCTACCC AGGAAATAG
 
Protein sequence
MDNDLHYEII KPHKPLSDFV DSFWFLHNQS DSNKETTGLP DGRVDLFLFQ SPTEPFRIAL 
LGLGTAQHES AVIPANGLMF SISFKLLAIE YIFHDTISDI VNNGKLLPEG FWGFTKDDLQ
DFDLFVEKAT KKIQSLLPKD IDKRKLKLFE LIYVGKGAVT VKELSEKVFW SSRQINRYFN
QQFGISLKTY CNILRFRASL EHIAQGKLFP EENFTDQNHF IKEIKKFSGV VPKELFKNKN
DRFILLSTLP RK