Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_1278 |
Symbol | |
ID | 8252378 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | - |
Start bp | 1510548 |
End bp | 1511306 |
Gene Length | 759 bp |
Protein Length | 252 aa |
Translation table | 11 |
GC content | 36% |
IMG OID | 644934933 |
Product | helix-turn-helix- domain containing protein AraC type |
Protein accession | YP_003091556 |
Protein GI | 255531184 |
COG category | [K] Transcription |
COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.711886 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACAATG ATTTGCATTA TGAAATCATA AAACCCCACA AACCGCTTTC GGATTTTGTA GATAGTTTTT GGTTTTTGCA CAATCAATCT GACAGCAATA AAGAAACTAC AGGATTGCCC GATGGACGCG TTGATTTATT CCTTTTTCAA TCGCCCACAG AACCTTTCCG TATCGCACTT CTTGGCTTGG GGACAGCACA ACACGAATCA GCTGTTATAC CTGCCAATGG ATTGATGTTT TCCATTAGTT TTAAATTACT TGCGATAGAA TATATTTTTC ATGACACCAT TTCAGACATC GTAAATAATG GGAAATTATT ACCCGAAGGT TTTTGGGGCT TTACAAAAGA TGACTTACAG GATTTTGACC TTTTTGTAGA AAAAGCTACG AAAAAAATCC AATCGCTTTT GCCGAAAGAT ATTGATAAAC GCAAACTCAA ATTGTTTGAA CTCATTTACG TAGGAAAAGG TGCTGTTACA GTAAAAGAAC TTTCCGAAAA AGTATTTTGG AGCAGCCGCC AAATCAACCG TTATTTCAAT CAGCAATTCG GTATTTCCCT GAAAACATAT TGCAACATTT TAAGGTTTAG GGCGTCGCTG GAACACATTG CACAAGGAAA ACTTTTTCCT GAAGAGAATT TTACTGACCA AAATCACTTC ATCAAAGAAA TAAAGAAATT TTCGGGCGTA GTACCGAAAG AATTATTTAA AAATAAAAAC GACCGATTTA TACTATTATC AACGCTACCC AGGAAATAG
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Protein sequence | MDNDLHYEII KPHKPLSDFV DSFWFLHNQS DSNKETTGLP DGRVDLFLFQ SPTEPFRIAL LGLGTAQHES AVIPANGLMF SISFKLLAIE YIFHDTISDI VNNGKLLPEG FWGFTKDDLQ DFDLFVEKAT KKIQSLLPKD IDKRKLKLFE LIYVGKGAVT VKELSEKVFW SSRQINRYFN QQFGISLKTY CNILRFRASL EHIAQGKLFP EENFTDQNHF IKEIKKFSGV VPKELFKNKN DRFILLSTLP RK
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