Gene Phep_1251 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_1251 
Symbol 
ID8252349 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand
Start bp1475713 
End bp1476738 
Gene Length1026 bp 
Protein Length341 aa 
Translation table11 
GC content39% 
IMG OID644934904 
ProductDNA polymerase III, delta subunit 
Protein accessionYP_003091529 
Protein GI255531157 
COG category[L] Replication, recombination and repair 
COG ID[COG1466] DNA polymerase III, delta subunit 
TIGRFAM ID[TIGR01128] DNA polymerase III, delta subunit 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.604271 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.540946 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTGCGG CCGACATAAT AAAAGACATC AAAGCAAGGA AGTTTAAGCC CATTTACCTA 
TTACATGGTG AAGAGCCTTA TTATATAGAT CAGATTATCC ATTATATGGA AGAACATATC
TTGAATGATA TGGAAAAGGG GTTTAACCAG ACGGTATTAT ATGGGAAGGA TACCGATATG
GCTACCATTA TGAATGCAGC CAAGCGTTAT CCGATGATGT CTGATTACCA GTTGATTGTA
GTGAAGGAGG CCCAGGACTT AAAATGGGCC AAGGAAACTG AGGGTAGCAG TAAGCAGGCA
GAATTTGTAC TGAATTATTT TGAAAAACCT TTACCGAGTA CCATTCTGGT ACTGGGATAT
AAGTATGCCA ATTTCGATAA GCGTAAAAAG ATCTATAAGG CAATAGACAA GCATGGGGTG
GTTTTTCAGT CAGACCTGGT GCGAGATTAT AAACTTGCCC AGTGGATAGA GGAGCTGGTT
AAGGAAAAGG GCTATAAAAT AGCACCTCAG GCATCGGCAT TGATGGCTGA ATACCTGGGC
GCCGATCTTT CTAAAATAGC CAATGAGGTT GAAAAGCTGC TGTTAAATAT TGGTAAGGAA
ACTATTATTG ATACCGATAT TGTTCAGAAA AACATTGGGA TCAGTAAGGA GTACAATGTT
TTTGAACTGC AAAAGGCATT GGCTGTAAAA AATGTATTGA AATGTAACCA GATCATCAAT
TACTTTGGTG ATAATCCTAA AGCCAATCCA ATGGTGATGG TAATGGCTAA CCTGAGTGCT
TATTTTACTA AAATACTGAA ATACCACTAC TTACCGAATA AAGGCGATGC AGCTAAGGAG
CTGGGTGTGA ACCCCTATTT CGTAAAAGAT TTTGAAACAG CAGCCCGAAG TTACAGTTTG
CCCAAAACTT TTGATATCAT TAGTCTGTTG AGGGAATATG ATTTGAAAAG CAAGGGTGTA
GACAGCACAG GAAATACCAC TGATGGTGAA CTGTTAAAAG AATTGTTGTT TAAAATGTTG
CATTAA
 
Protein sequence
MSAADIIKDI KARKFKPIYL LHGEEPYYID QIIHYMEEHI LNDMEKGFNQ TVLYGKDTDM 
ATIMNAAKRY PMMSDYQLIV VKEAQDLKWA KETEGSSKQA EFVLNYFEKP LPSTILVLGY
KYANFDKRKK IYKAIDKHGV VFQSDLVRDY KLAQWIEELV KEKGYKIAPQ ASALMAEYLG
ADLSKIANEV EKLLLNIGKE TIIDTDIVQK NIGISKEYNV FELQKALAVK NVLKCNQIIN
YFGDNPKANP MVMVMANLSA YFTKILKYHY LPNKGDAAKE LGVNPYFVKD FETAARSYSL
PKTFDIISLL REYDLKSKGV DSTGNTTDGE LLKELLFKML H