| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_1249 |
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| Symbol | |
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| ID | 8252347 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | + |
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| Start bp | 1473434 |
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| End bp | 1474816 |
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| Gene Length | 1383 bp |
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| Protein Length | 460 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 644934902 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT family |
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| Protein accession | YP_003091527 |
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| Protein GI | 255531155 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0853449 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.783634 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACCAT ATATAGGACT ACTGCTGCTA TTGATAACGC TTGCTTCCTG CCGGATATCA
AAACCCTATC AGCAACCGGA GTTTGATACG GGTAAACTGT ACCGGGATGC TGAAGGTAGA
GATACCACAA ACATAGTATC GGTACACTGG AACAAGTTTT TTGGTGATAC CATTCTGACA
GGGCTGATTG CAGAAGGTTT AAGCCGGAAT ATTGATATGA AAATTGCTTT GCAGCGTATT
GATGCGGCAA GGGCTAATTT TCAACAAAGC AAAGCGGCCT TTTTACCGGA TTTAAATGGC
AATGCCAGTA TTAAACAATC TAAACTCGCT TTTCCGCAGG GCTTCGGACT CATCAACTCG
TCTACGCAGT ACGATATTGG CCTGAGTGCA AGCTGGGAAG CCGATATCTG GGGTAAACTA
AAAAGCACCA AACGAAGTGC CCTGGCAGGA CTGCTGCAAA CAGAGGAGGC ACGAAAAGCT
GTGCAAACCC AGTTAATTGC GGATATTGCC AATCGTTATT TTACTTTGCT AGCCCTTGAT
CAGCAATTGC AGGTTTTGGA ACAAACTGTA AATAACCGGA AAACTGATGT GCGTACAATG
AAGGCCTTAA AAGCCGCCAA TATAGTAAAC GGTGCAGCAG AAGTGCAAAG TGAAGCCAGT
CAGTATGCGG CTGAAGTGGC TGTCCCACGC TTAAAAAAGC AGATCAGGGA AACGGAAAAC
GCATTAAACA TATTGTTGGC GAGACCTCCA TCGGCAATTT ATAGGTCATC TTTGGATGAA
CAACAACTTT TGATAGATTT AAAAGCCGGT ATTCCGGCAC AACTGCTGCA AAACCGCCCG
GATATTAAAC AGGCTGAGTA TGCTTTTATG GCTGCTTTTG AAAATACCAA TGCTGCCCGT
AAATTGTTCT ATCCCTCGTT TAACCTAACA GCAGCGGGTG GTTTTACCAG CTTCAGTTTA
AAAGACTGGC TAACGCCAGA TGGTTTATTT GGCAATATTG CGGCGGGCTT AGCGCAGCCA
ATTTTTAACA AAGGCCTAAA TAAGGCAAGG TTAATCACTG CCCGGACTGT GCAACAGGAA
GCGGCCTTAA ATTTCCAGCA ATTTTTACTG AAGGCCGGAG AGGAGGTGTC TAATGCATTG
TTTGCTTATC AGACGGCTAA AACGCAACAG GAAATCAGGG TTAAACAGTT AGCCGCACTT
CAGAAATCAG TTGATTTTAC AAAGAAGCTA CTGCGTTACA GTTCGGCTAC CAATTATACG
GATGTGCTGA CCTCTGAGCA GAATCTGCTG TCGGCACAAA TGGAGGATAT TGACGATAAA
CTGCAGCAGT GGCAGGCGGT AATTGCATTG TACCGTTCTC TTGGCGGAGG TAGTGAAAAT
TAG
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| Protein sequence | MKPYIGLLLL LITLASCRIS KPYQQPEFDT GKLYRDAEGR DTTNIVSVHW NKFFGDTILT
GLIAEGLSRN IDMKIALQRI DAARANFQQS KAAFLPDLNG NASIKQSKLA FPQGFGLINS
STQYDIGLSA SWEADIWGKL KSTKRSALAG LLQTEEARKA VQTQLIADIA NRYFTLLALD
QQLQVLEQTV NNRKTDVRTM KALKAANIVN GAAEVQSEAS QYAAEVAVPR LKKQIRETEN
ALNILLARPP SAIYRSSLDE QQLLIDLKAG IPAQLLQNRP DIKQAEYAFM AAFENTNAAR
KLFYPSFNLT AAGGFTSFSL KDWLTPDGLF GNIAAGLAQP IFNKGLNKAR LITARTVQQE
AALNFQQFLL KAGEEVSNAL FAYQTAKTQQ EIRVKQLAAL QKSVDFTKKL LRYSSATNYT
DVLTSEQNLL SAQMEDIDDK LQQWQAVIAL YRSLGGGSEN
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