| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_1243 |
|---|
| Symbol | |
|---|
| ID | 8252341 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | + |
|---|
| Start bp | 1463930 |
|---|
| End bp | 1464493 |
|---|
| Gene Length | 564 bp |
|---|
| Protein Length | 187 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 644934896 |
|---|
| Product | RNA polymerase sigma-70 factor |
|---|
| Protein accession | YP_003091521 |
|---|
| Protein GI | 255531149 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.935944 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.793417 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACCGAT ACAAGATTTT TACAGATGTT GAATTGGTAG CGTTATTAAA GAAGGGCGAT
AAAGTAGCGT TTGCAGAAAT TTACGACCGT TACTGGGATA AACTTTTTAG TATAGCCGGG
CATAAGCTGG AACAGTTGGA AGATGCAGAG GAAGTGGTAC AGAACATCTT TATTGCTTTG
TGGAACCGGC GTGAAACTTT GAACATCACC TCTACCTTGA ACAGCTACCT TGCGGTATCA
GTGAAGTATC GCGTAATTAA GATGCTGGAA AAGCAGTATC GTCAAAAAAA ATATGCAGAC
AGTTTGGGAA AGGAATGTGG GCTGGATGAT TCTACCCAGG AATGGCTTGA GTTTACGGCA
CTTAAAGCAT CGTTGGAACA ATTGGTAAAA AAACTTCCCG ATAAATGTCA GCTGGTTTAC
CGGATGAGCA GGGAAGAGGG CTTTAGCCAG AAAGAAATTG CCGGAAAACT GGATATTTCT
GAAAAAACAG TGGAAGCTCA TTTAGGTAAA GCTTTAAAAA CAATCAGATC AGGTTTGAAC
ATTTTGATAT CAATGCTTTT GTAA
|
|---|
| Protein sequence | MDRYKIFTDV ELVALLKKGD KVAFAEIYDR YWDKLFSIAG HKLEQLEDAE EVVQNIFIAL
WNRRETLNIT STLNSYLAVS VKYRVIKMLE KQYRQKKYAD SLGKECGLDD STQEWLEFTA
LKASLEQLVK KLPDKCQLVY RMSREEGFSQ KEIAGKLDIS EKTVEAHLGK ALKTIRSGLN
ILISMLL
|
|---|
| |