| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_1215 |
|---|
| Symbol | |
|---|
| ID | 8252313 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | - |
|---|
| Start bp | 1435585 |
|---|
| End bp | 1436058 |
|---|
| Gene Length | 474 bp |
|---|
| Protein Length | 157 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 644934870 |
|---|
| Product | alkylhydroperoxidase like protein, AhpD family |
|---|
| Protein accession | YP_003091495 |
|---|
| Protein GI | 255531123 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2128] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR00778] alkylhydroperoxidase AhpD family core domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAACAGA GAATCAATGC CTTCGAAAAA GGTCAGCATG CAATGAAAGC AATGTACGGT
ATAGGTGCTT ATCTGAGCAA ATCATCAATT GAACCGAAAC TTTTACATCT GCTTTATTTC
AGGGTATCGC AAATCAATGG CTGTGCATAT TGCCTGGATA TGCATTCTAA AGACCTGCGT
GCAGCGGGAG AAACAGAACA GCGCCTGTAT GTGCTGGATG CCTGGAGAGA GGCCCCCTTG
TTTAGTGAGC GCGAATGTGC AGCCCTGGCA TGGGCCGAAG CAGTAACCCG GATAAGGGAT
GGCAATGTAG CCGATGAAGT ATATGAAAGG GCACGCAAAC AGTTTTCTGA AGAAGAACTG
ATCGACCTGA CACTAGGCAT TACAACCATT AATACTTATA ACCGCATCAA TATTGCTTTC
CGTACGGTTG CCGGCAGTTA TACCGTAGGC CAGCATAAAG TACAGGTAAA ATAA
|
|---|
| Protein sequence | MEQRINAFEK GQHAMKAMYG IGAYLSKSSI EPKLLHLLYF RVSQINGCAY CLDMHSKDLR
AAGETEQRLY VLDAWREAPL FSERECAALA WAEAVTRIRD GNVADEVYER ARKQFSEEEL
IDLTLGITTI NTYNRINIAF RTVAGSYTVG QHKVQVK
|
|---|
| |