| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_1213 |
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| Symbol | |
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| ID | 8252311 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | - |
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| Start bp | 1433920 |
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| End bp | 1435146 |
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| Gene Length | 1227 bp |
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| Protein Length | 408 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 644934868 |
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| Product | RNA polymerase sigma factor, sigma-70 family |
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| Protein accession | YP_003091493 |
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| Protein GI | 255531121 |
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| COG category | [K] Transcription |
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| COG ID | [COG4941] Predicted RNA polymerase sigma factor containing a TPR repeat domain |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAACAGG AATTTCTAAA GCATTTATTT CAGCAGGAGT TTTCGAAAAT GGTTGCTGTA
ATCAGCAGGC GCTTTGGCCT GCAGCACATA GAAACAGCAG AAGACATTGT GAGTGAAACA
TTTCTGCTGG CTACGGAGAC CTGGGGAACG AAAGGGCTGC CGGCAAATCC GGCGGCATGG
CTGTATACTG TAGCCAGGCA AAAGACCCTT TCCTATTTCA GGAGAAATAA AATTTTTGAA
GACAAGGTAA TTCCCGAAAT CCGGCGTAAA CAAGAACTGC CGGACCAACC TGAGGTATTG
AATTTCTCCC AACAAAATAT TAAAGACAGC CAGCTGCAAA TGCTCTTTGC GATATGTATG
CCAGCAATTG CCAGTGAGGC ACAAATAGGC CTTGCATTGC GCATCCTTTG CGGCTTTGGT
ATCGATGAAA TTGCAGAAGC TTTCCTGTCT AACAAAGAGA CCATTAACAA AAGGCTGTTC
AGGGCCAAAG AAAAGCTGCG TTCAGAGAAG ATACAGCTGG TATTTCCTCC TGAGAATGAA
ATCACCAAAC GTCTGGACAA TGTGCTCCAT ATCATCTATC TGCTGTTTAG CGAAGGTTAT
TATTCCAAAA CCCAGAACCA GATCCTGCGA AAAGAACTTT GCATAGAAGC CTTACGCTTG
GGCTTAATGC TTACGGAATA CGAAAAGACA AATCTGCCAA AAACAAATGC CCTTATTGCC
CTGATGTGTT TCCACGCTTC ACGTTTTGAT GCCCGGCGAA ATACTGAAGG CGAGCTGGTT
TTATACGAAG AGCAGGATGA AAAACGCTGG GACACAGCAC TCATCAACCA GGGCATCCAT
TTTTTGAACT TATCTGCCAG CGGCAAAGAA TTGAGCCCTT ACCACCTGGA GGCCAAAATT
GCTTATTGCC ATTGCAGCAA AGAAGATACT GCAGAAAAAT GGGAAGAGAT CTTACAGCTT
TATAACCAGC TTTTAATGAT CAGCTATTCT CCTGCTGCTG CACTGAACAG GACATTTGCC
TTATACAAGG CAAACGGAGC AGAACCGGCC CTGAGGGAAG CAGAAAAGTT AAAACTTGAA
GACAACCATT TCTATTTCGT ATTGCTGGGA GAACTCTATA AAAACATAGA CAAAAGCAAA
GCGATGAACT GTTTTGAAAG GGCACTGGCA TTGGCAAAGA CATCGGCAGA GCAACAGCTC
ATCCGTCAGA AAATAAAGGA GCTATAA
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| Protein sequence | MEQEFLKHLF QQEFSKMVAV ISRRFGLQHI ETAEDIVSET FLLATETWGT KGLPANPAAW
LYTVARQKTL SYFRRNKIFE DKVIPEIRRK QELPDQPEVL NFSQQNIKDS QLQMLFAICM
PAIASEAQIG LALRILCGFG IDEIAEAFLS NKETINKRLF RAKEKLRSEK IQLVFPPENE
ITKRLDNVLH IIYLLFSEGY YSKTQNQILR KELCIEALRL GLMLTEYEKT NLPKTNALIA
LMCFHASRFD ARRNTEGELV LYEEQDEKRW DTALINQGIH FLNLSASGKE LSPYHLEAKI
AYCHCSKEDT AEKWEEILQL YNQLLMISYS PAAALNRTFA LYKANGAEPA LREAEKLKLE
DNHFYFVLLG ELYKNIDKSK AMNCFERALA LAKTSAEQQL IRQKIKEL
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