| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_1188 |
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| Symbol | |
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| ID | 8252286 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | - |
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| Start bp | 1409158 |
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| End bp | 1410327 |
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| Gene Length | 1170 bp |
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| Protein Length | 389 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 644934843 |
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| Product | efflux transporter, RND family, MFP subunit |
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| Protein accession | YP_003091468 |
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| Protein GI | 255531096 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.856123 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAACTA CAATCCAATC TTTTTATTTA TTAATCCCTG TATTACTGAT CATCAGTTCA
TGTGGCAACA GCGATCAGAA AAAACCCGGT GCAGCTGCTG ACCAGGTACA GTCGTACCCG
GTTTTTACCA TAACAACACA ATCTACCGAC CTGGAAACAG ATTACCCGGC TACACTTGAA
GGGATTCAGA ATGTAGACAT CAGACCGAAG GTGGATGGTT TTATTGAAAA GATATATGTT
GACGAAGGAG CTACCGTTAA AAAAGGCCAG CTGCTGTTCA GTATCAATGC ACCACAATAC
GAACAATTGG TAAGAACAGC CACCGCTGCC ATCAGCAGTG CCGAGGCCGA TGTAAACAGT
GCCCAGTTGC AGGTTAACAA GACCAAGCCC TTGGTAGATA AGGACATCAT CAGCAAATAC
GATCTTGATG CCGCCCAGTT AACCCTGCAA AGCCGCAAGG CAGCCCTGGC ACAAGCCAGA
GCAGAACTGG TAAATGCCAA AGTAAATTTA GGCTATACCC GCATCACCAG TCCTGTTGAC
GGTGTAATAG GCAGCATTCC TTTTAAAACC GGAAGCCTGG TAAGTAGCAG TAGCGCAAGC
CCTTTAACTA CAGTATCCAA CATTTCCAGG GTATATGCTT ATTTCTCTAT GAATGAAAAG
CAACTGCTGG AGTTTTCGCG TCATTATAAA GGCACTAACC TTGCAACCAA ATTAAAAAAC
ATCCCTGCGG TATCATTGGT GTTGGCAGAC GGCACAATTT ATGCTGAAAA CGGTAAGATA
GAATCTATAA ACGGCCTGAT CAATACCAGC ACGGGTTCGG CCAGTTTAAG GGCTACTTTT
TCGAACCCGG CAACGCTTTT AAGGAGTGGT GCAAGTGCAT CCGTGCGGAT TCCGCAGCAC
CTGGAGAACA TCATCCTTAT TCCCCAAAAG GTTACGACCG ACCTGCAGGG CAAAAAATTT
GTGTATGTGC TGGATGAAAA GGGAAATGTA AAAAATACGG AAGTGGAGGT TATGGAGCTT
ACGAAAGGTA ATTTTTATGT GGTTACCAAA GGCCTTAAGA CCGGCGATAA AGTGGTACTT
GAAGGCTTCC AGTCCCTGAA AGATGGTACA CAGATCAAAC CTGAAGAAAA AAGTGCAGAT
TCTGTCTTTG CTGATCTCCA AAACAAATAA
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| Protein sequence | MKTTIQSFYL LIPVLLIISS CGNSDQKKPG AAADQVQSYP VFTITTQSTD LETDYPATLE
GIQNVDIRPK VDGFIEKIYV DEGATVKKGQ LLFSINAPQY EQLVRTATAA ISSAEADVNS
AQLQVNKTKP LVDKDIISKY DLDAAQLTLQ SRKAALAQAR AELVNAKVNL GYTRITSPVD
GVIGSIPFKT GSLVSSSSAS PLTTVSNISR VYAYFSMNEK QLLEFSRHYK GTNLATKLKN
IPAVSLVLAD GTIYAENGKI ESINGLINTS TGSASLRATF SNPATLLRSG ASASVRIPQH
LENIILIPQK VTTDLQGKKF VYVLDEKGNV KNTEVEVMEL TKGNFYVVTK GLKTGDKVVL
EGFQSLKDGT QIKPEEKSAD SVFADLQNK
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