| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_1186 |
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| Symbol | |
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| ID | 8252284 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | - |
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| Start bp | 1404522 |
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| End bp | 1405928 |
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| Gene Length | 1407 bp |
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| Protein Length | 468 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 644934841 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT family |
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| Protein accession | YP_003091466 |
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| Protein GI | 255531094 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACACCA GATATCATAA ATATTATTTC ATTATCGGTT TTTCTATACT GACCTTAACG
GCCTGCGTAA GCAGAAAATA TGAACGCCCG GCAGTAAACA GTAACGATTT ATACCGCGAC
AATACTACTG GCGACAGTAC GACCATAGCC AGCCTTCCCT GGAAAAACCT GTTTGCTGAT
GCGGCTTTAC AGGCACTGAT ACAGCAGGGT ATCAACGAAA ACCTGGATTT AAAACAGGCC
ATTGAAAGGA TTAAAATTGC CGAAGCTACC TTATTGCAAA GCAAGGGTGC TTTATTGCCG
AGCCTGACCG CTGATTTATC GGTAACAGAT GCCAAACAGT CCAGGGCAGC TTTAAACTTC
CCTCCCGGCA TCAACATCAA TACGGAAACC CAAACCTACA AAGCACAGCT GAGCACCAGC
TGGGAAGCCG ATATATGGGG CAAACTGAGC AGTGCTAAAA GATCGGCTTA TGCCTCTTTA
TTGCAAAGTG ATGCTGCAAA AAGGGCTGTG CAAACGCAAC TGATTGCCAA TATTGCCAAT
GGCTATTACA ATTTGCTGGC CTTAGATAAG CAGCTGGCCA TTACAGAGCA GACCATCAGG
ATCAGGCAGA CAGATGTAGA GACCATGAAA TCTTTAAAGG AAGGTGCCGT GGTAAATGGT
GCTGCCGTGG TGCAAAGTGA GGCCAATTTA TATGCCGCAC AGGTAACCCT GCCCGATCTG
AAAAGAAACA TCAGGGAAAC AGAAAACGCT TTGAGTATCC TTTTAGGAAA AGGCCCTGGA
AAAATTGAAC GGGGCACAAT TGATCAGCAA ACTGTTTACA GCAACCTGCA AACAGGCGTA
TCGGCCCAGC TGTTACAGAA CAGACCTGAT GTGCAGGCCG CTGAGTTTGC CTTCAGGGCA
GCTTTCGAGA ATAAAAATGT AGCCCGGAGC TATTTTTATC CCGCCTTAAC TTTGACAGCC
AATGGTGGCT TATCCAGTCT GAGCTTCAAA AACTTTTTCG ACAATTCGGT TTTCTACAAT
TTAATCGGCG GCATTACCCA GCCGATATTT AATAAAGGAC AGAATAAGGC CAGGTTAAAA
ACAGCTGAAG CCCAAAAGCA GATCGCATTT TACAGCTTTC AGCAAACGCT GCTGACCAGT
GGCCAGGAAG TGTCGAATGC TTTATATGCC TATCAAACGG CAGCAGAGAA AGAAACAACA
AGGGCAATGC AGGTGGCATC ACTGACCAAA GCCGTAGATT ATACCAAGGA ACTCCTGCGC
TACAGTTCAG CTACAAATTA TACTGATGTG CTCACCTCTG AGCAAAGTTT ACTGGCAGCA
CAATTGAGCG GCATTAACGA CCGGCTGCAA AAGCTACAAT CGGTAGTAAA TTTATACCGG
GCGCTGGGAG GTGGATGGAA GGAATAA
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| Protein sequence | MNTRYHKYYF IIGFSILTLT ACVSRKYERP AVNSNDLYRD NTTGDSTTIA SLPWKNLFAD
AALQALIQQG INENLDLKQA IERIKIAEAT LLQSKGALLP SLTADLSVTD AKQSRAALNF
PPGININTET QTYKAQLSTS WEADIWGKLS SAKRSAYASL LQSDAAKRAV QTQLIANIAN
GYYNLLALDK QLAITEQTIR IRQTDVETMK SLKEGAVVNG AAVVQSEANL YAAQVTLPDL
KRNIRETENA LSILLGKGPG KIERGTIDQQ TVYSNLQTGV SAQLLQNRPD VQAAEFAFRA
AFENKNVARS YFYPALTLTA NGGLSSLSFK NFFDNSVFYN LIGGITQPIF NKGQNKARLK
TAEAQKQIAF YSFQQTLLTS GQEVSNALYA YQTAAEKETT RAMQVASLTK AVDYTKELLR
YSSATNYTDV LTSEQSLLAA QLSGINDRLQ KLQSVVNLYR ALGGGWKE
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