| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_1179 |
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| Symbol | |
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| ID | 8252277 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | + |
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| Start bp | 1396780 |
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| End bp | 1399218 |
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| Gene Length | 2439 bp |
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| Protein Length | 812 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 644934834 |
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| Product | phospholipase C, phosphocholine-specific |
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| Protein accession | YP_003091459 |
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| Protein GI | 255531087 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3511] Phospholipase C |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence
[TIGR03396] phospholipase C, phosphocholine-specific, Pseudomonas-type |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.223051 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAAGCA GACGAGATTT TATCAGGAAG GCCGGTTTAT TAACCGGTGC GCTGGGCATT
GCAGGTATAT TGCCCGCATC TATCCAAAGG GCAATGGCCA TTGATCCCAG GCCGGGTACT
ACCTTTTTAG ATGCTGAATA TGTTGTTTTT TTAATGCAAG AAAACAGGTC GTTCGATCAT
GCTTTTGGTA GTCTTAAAGG GGTACGGGGG TTTAATGATC CAAGAGCAAT TACCTTACCT
GATCAATATC CTGTCTGGTT GCAGCGCAAT AAAAAAGGTG AAACTTATCC GCCGTTCAGG
CTTAATATTA AAGATACCAG GGCGACCTGG ATGAGCGCCC TTCCACATTC CTGGGAAAAT
CAGGTAGACG CAAGAAACAA CGGTAAATAT GATGGCTGGC TGGAAGCAAA AAGGTCAGGT
AATAAAGCCT ATGCTGATAT GCCCTTAACG ATGGGGTATT ATAACCGCGA AGATATTCCA
TTCTATTATT CCCTGGCTGA TGCCTTTACC GTTTGTGACC ATAATTTCTG TTCTGCACTG
ACAGGAACAA GTCCTAACCG GTGTTTTTTC TGGACGGGCA AGATCAGGGA GCAGCAAAAT
GCAACATCCC TGGCACATCA TTCCAATGGA TATATCGATG GTGCTGAAAG GCTTTCATGG
AGCACTTTTC CCGAGCGTCT TTCCAAACAC AATGTAAACT GGAAAATATA TCAGAACGAA
CTGAGTGTAG ATGTGGGGCT TGAAGGGGAA GCAAATGGAT GGCTGTCTAA TTTTACAGAT
AATGATATGG AATTTTTCAA ACAATATCAT GTAAAAAGGC ATCCGGAGCA CCTTGTTTAT
CTGCGTAAAG CCAAAGTTCA GCTCGAAGAA CAATTCAAAA ATAAACCCGA CCCCAAGCTA
AAGGAAAAAC TCGATTTTGT AACCGGTGAA ATAAATTTTT TGGAGATCAA TACCCTTGAT
ACCTTAACAC CTGAACAGCG TGATCTGCAT AAAAGAGCCT TTGTTACCAA CAGGAATGAC
CCCGACTTTC ATCAGCTTGA AACCATTACC TACAATGACA AGGGTACAGA AAGAACTGCC
AAAATTCCAA AAGGAGACGT ATTACACCAG TTTCGTACCG ATGTAGATGC AGGTAAATTA
CCTGCTGTTT CCTGGCTTGT TGCGCCCTGT AATTTCTCTG ACCACCCAGC TGCCCCCTGG
TATGGTGCCT GGTACCTTTC GGAAACAATA GACATCCTGA CCAAAAATCC TGAAGTTTGG
AAAAAAACAA TTTTTATTCT TACTTATGAC GAAAATGATG GGTATTTTGA TCACCTTCCA
CCATTTGTGG CACCCGATCC AAAAGATCCT GCAACCGGGA AAGTATCAGC CTCATTAGAC
AGTAGTGCAG AATACATTTA TAAAGGAGCC GACAGCAACA GGAAAAGTCC GGTAGGTTTA
GGTTTCAGGG TGCCAATGGT GGTGGTTTCT CCCTGGTCAA GAGGTGGCTA TGTAAATTCC
CAGGTATTTG ATCATACCTC TTGTATCCAG TTTTTAGAGC ATTTTTTGAG TCATAAAACA
GGTGAAAAAA TCTATGAAGA CAATATTAGT TCCTGGAGAA GAAGCCTGTG CGGCGATTTA
ACTTCTGTAT TCAGGCCTTA TAACGGCGAA AATATACCTT CACCAGAGCC AGTGCAGCGC
ATACCATTCC TAACGGGTAT TCATAAGGCT AAATTTGAAA AGCTACCTGA CAATTTTAGA
TCGCCGGATA AAAACATCGT AGCGGATATC CTTAAAAGTC CAATACTGAA TCCGAACCTG
GCCCGGCAGG AAAAAGGGAT TAAGCCTGCC AATACCATAC CTTATGAGTT ATATGCAAAT
GGTGTGCTGG ATGTTGTAAA TAAACAGTTT AAAATTGATT TTACAGCAGG TGACAGGTTT
TTTGGCGCCA AAGCCAAGGG TGCCGGTTTC ATCGTTTACG GAGCAGACAA CAACTGGTCG
TTTACTGTTG ATAAAGGCGA TACCCTAAGT TATCAATGGC CATTGCACAG TTTTCAAGAC
CAGGCCTATA TGCTAAAAGT TTACAGTGCA AACGGCTTTT ACCGCTGTTA TAAAGGGAAT
GCAAAAGATC CTGAAATTGC GCTAACTTTA AGTTACCAGA CGGAAAAAAA TAGCCATCGG
GCATCCGGCA ATGTTTTGTT GCACATTAAA CGTTTGGCCA AAGGCAGACA GCTTAAACTG
ACCATAACCG ATAACAGTTA CGGGAAGGCA GCAGTCCATG TTGTTTTAAA TCAGGAACAG
CATGAAATAT TTGTTCCACT CGACATTAAA GCAAATCATT GCTGGTATGA TTTTACAGTT
ACCTTAGCAC AATATAGCAG CTATAGCCAG CAATTTGCAG GACATGTAGA ACATGCAGGA
GAAAGTTTTA CCGATCCCTT AATGGGTAAT GTGATGTAA
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| Protein sequence | MESRRDFIRK AGLLTGALGI AGILPASIQR AMAIDPRPGT TFLDAEYVVF LMQENRSFDH
AFGSLKGVRG FNDPRAITLP DQYPVWLQRN KKGETYPPFR LNIKDTRATW MSALPHSWEN
QVDARNNGKY DGWLEAKRSG NKAYADMPLT MGYYNREDIP FYYSLADAFT VCDHNFCSAL
TGTSPNRCFF WTGKIREQQN ATSLAHHSNG YIDGAERLSW STFPERLSKH NVNWKIYQNE
LSVDVGLEGE ANGWLSNFTD NDMEFFKQYH VKRHPEHLVY LRKAKVQLEE QFKNKPDPKL
KEKLDFVTGE INFLEINTLD TLTPEQRDLH KRAFVTNRND PDFHQLETIT YNDKGTERTA
KIPKGDVLHQ FRTDVDAGKL PAVSWLVAPC NFSDHPAAPW YGAWYLSETI DILTKNPEVW
KKTIFILTYD ENDGYFDHLP PFVAPDPKDP ATGKVSASLD SSAEYIYKGA DSNRKSPVGL
GFRVPMVVVS PWSRGGYVNS QVFDHTSCIQ FLEHFLSHKT GEKIYEDNIS SWRRSLCGDL
TSVFRPYNGE NIPSPEPVQR IPFLTGIHKA KFEKLPDNFR SPDKNIVADI LKSPILNPNL
ARQEKGIKPA NTIPYELYAN GVLDVVNKQF KIDFTAGDRF FGAKAKGAGF IVYGADNNWS
FTVDKGDTLS YQWPLHSFQD QAYMLKVYSA NGFYRCYKGN AKDPEIALTL SYQTEKNSHR
ASGNVLLHIK RLAKGRQLKL TITDNSYGKA AVHVVLNQEQ HEIFVPLDIK ANHCWYDFTV
TLAQYSSYSQ QFAGHVEHAG ESFTDPLMGN VM
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