| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_1161 |
|---|
| Symbol | |
|---|
| ID | 8252255 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | + |
|---|
| Start bp | 1364522 |
|---|
| End bp | 1366174 |
|---|
| Gene Length | 1653 bp |
|---|
| Protein Length | 550 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644934812 |
|---|
| Product | Altronate dehydratase |
|---|
| Protein accession | YP_003091441 |
|---|
| Protein GI | 255531069 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2721] Altronate dehydratase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACAAA GAATATTAAA GGTTCATCCT AAGGATAATG TGTTGGTTGC ACTTACCGAT
CTGGTAAAGG GAGAGGAAGT GATTTATGAA GGTGAATCTT ATTTGCTGAC AGACAATGTG
CCGGCCAAGC ATAAATTTAC CACTGCCGAT CTGGCTGCGG GGGATAAAGT GATCATGTAT
GGTGTATTGG TAGGTAAGGC CCAGATGGAC ATTCCGGTAG GTTCAATTTT AACTACCAGT
AACATCAAAC ATGCCGCTAC TGAGTTTAAC ACTACAGATG CACATGTCGA CTGGCAAAAA
CCGGATGTAA CAGAATGGAA AGACAAAACC TTTCAGGGCT TTCACCGCAA CGATGGTCAG
GTGGGTACCG CCAATTACTG GCTGGTGATC CCTATGGTGT TTTGTGAGAA CAGAAACCTG
GAGGTTTTAC AGGAAGCCCT GATGAACAAC CTGGGCTACG GCCGGAACGA GACCTACCAG
TCGCAAGCCA AAGAACTGAT GGCCCTTTAC GAAAAAGGAG CCAGTGTAAA CGACATTTTA
AATGCCCAGC TTACGTATTC GGAAAAGGCA CAAAAGCAAA ACCGGATGTT TCCGAATGTA
GACGGTATTA AATTTTTGAC ACATACGGGG GGCTGCGGCG GAACCCGTCA GGATTCAGAA
ACTTTATGCG GATTGCTGGC AGGATACATT ACCCATCCCA ATGTAGCGGG AGCAACAGTG
TTAAGTTTGG GTTGTCAGAA TGCCCAGGTA AGCATCCTTA AAGAAGAAAT TGAAAAGCGG
AGCAGAAACT TCGACAAGCC TTTATATATA CTGGATCAGC AAACCGTTGG AAAAGAATCG
GAACTGTTGA GCCAGGCGAT CAAGCAGACC TTTGCAGGTT TGATCCAGGC CAATGCCAAT
GAAAGAAAGC CGGCACCTTT AAGCAAACTG TGCATAGGAC TGGAATGTGG TGGTTCTGAT
GGCTTTTCAG GTATCTCTGC AAACCCCGCA ATTGGGTATG CCTCCGATCT GCTGGTGGCA
CTGGGTGGAT CGGTGATCCT GGCCGAGTTC CCTGAACTCT GTGGTGTAGA GCAGAACCTG
AGCGATCGGT GTGTGGACAA AGAAGATGCT GAACGTTTTG AATACCTGAT GAAAACCTAT
AGCAAAAGGG CAACTGAGGC CGGTTCGGGC TTTGACATGA ACCCTTCACC AGGAAATATT
AAAGATGGTT TGATCACGGA TGCCATTAAA TCTGCCGGAG CAGCTAAAAA AGGAGGCACT
TCTCCGGTGG TTGCTGTACT GGACTACCCC GAAAAAGTAT TTAAACCAGG ATTGAACCTG
CTCTGTACCC CGGGTAATGA CGTGGAATCG ACCACGGCCG AAGTGGGCTC GGGTGCAAAT
GTAGTGCTGT TTACTACCGG CCTGGGTACC CCCACAGGCA ACCCTATTGC CCCGGTAATT
AAAATATCAA GCAATACCAA GCTGTTTAAT AAGATGAGCG ACATTATAGA CCTGGATACA
GGTCCTATTA TTGATGGCGA CGAGACCATT AAAGATGCCG GTAGCAGGAT CTTGAATTAT
GTGATCGACG TGGCCAGCGG TCATACTACC GTGAGTGCAG TACGTCACAT TCAGGACGAT
TTTATTCCAT GGAAAAGAGG CGTTTCCTTA TAG
|
|---|
| Protein sequence | MKQRILKVHP KDNVLVALTD LVKGEEVIYE GESYLLTDNV PAKHKFTTAD LAAGDKVIMY
GVLVGKAQMD IPVGSILTTS NIKHAATEFN TTDAHVDWQK PDVTEWKDKT FQGFHRNDGQ
VGTANYWLVI PMVFCENRNL EVLQEALMNN LGYGRNETYQ SQAKELMALY EKGASVNDIL
NAQLTYSEKA QKQNRMFPNV DGIKFLTHTG GCGGTRQDSE TLCGLLAGYI THPNVAGATV
LSLGCQNAQV SILKEEIEKR SRNFDKPLYI LDQQTVGKES ELLSQAIKQT FAGLIQANAN
ERKPAPLSKL CIGLECGGSD GFSGISANPA IGYASDLLVA LGGSVILAEF PELCGVEQNL
SDRCVDKEDA ERFEYLMKTY SKRATEAGSG FDMNPSPGNI KDGLITDAIK SAGAAKKGGT
SPVVAVLDYP EKVFKPGLNL LCTPGNDVES TTAEVGSGAN VVLFTTGLGT PTGNPIAPVI
KISSNTKLFN KMSDIIDLDT GPIIDGDETI KDAGSRILNY VIDVASGHTT VSAVRHIQDD
FIPWKRGVSL
|
|---|
| |