Gene Phep_1157 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_1157 
Symbol 
ID8252251 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand
Start bp1358998 
End bp1359966 
Gene Length969 bp 
Protein Length322 aa 
Translation table11 
GC content42% 
IMG OID644934808 
ProductPectinesterase 
Protein accessionYP_003091437 
Protein GI255531065 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG4677] Pectin methylesterase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones41 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAAAAT TGGGTCTTAA ATGCCTTACT ATAGCCCTGG TAGCCCTGCT ATCGGGAACG 
AATATTTACG GCCAGGATAA AAAGATCATT GTTGCACAGG ATGGTAGTGG TGATTATAAA
ACGGTACAGG AAGCTATAAA CGCGGTGCCC GATTTTAGAA ATGCCACTAC GGTTATCCTG
ATCAAAAATG GCAATTACAA AGAAAAACTT AACCTTTCGG CCTCTAAAAA GATGGTTAAA
CTGATTGGCG AAAACCCTGA AAAAACTGTG CTTACTTATG ATGACTATGC ACAAAAGAAA
AACAGTTTCG GAGAAGCAAT GGGTACTTCA GGATCTTCCT CATTCTATAT TTATGGGGAT
GGTTTTGCTG CAGAGAACAT CACCTTTGCC AATTCTTCAG GGCCGGTCGG ACAGGCTGTT
GCGGTATGGA TCGCATCGGA TCAGGCGGTA TTCAAAAACT GCAGGTTCCT TGGTTTTCAG
GATACACTTT ATACCTATGG CCGTGGCAGC AGGCAATATT ATAAAAACTG TTATATAGAA
GGGACAACTG ATTTTATTTT TGGGTCATCT ACTGCAATGT TTGAAAATTG TATCCTCTTT
TGCAAAAAAG GTGGGTCATA CCTTACCGCG GCCTCTACCC CCGATACAAC CAAATATGGT
TATGTTTTCA AAAATTGTAA AATAACCGGC GATGCACCTG AAAACTCTTT TGCATTGGGC
CGTCCATGGC GACCGTATGC TAAAACTGTT TTCATCAATT GCGAACTTGG AAATATGATC
AAACCCGCCG GCTGGGACCA TTGGGGTAAA GAGAGCAATA AACAGACAGC CTATTATGCA
GAATATAAAA ACACCGGACC TGGTTATAAA CCCGATAAAA GAACAGATTG GTCGCAGCAG
CTTAGTGATG ACGAAGCCAA AACTTATAAT ATAACACAGG TTTTCCGTGG CTGGAACCCT
GTACAATAA
 
Protein sequence
MAKLGLKCLT IALVALLSGT NIYGQDKKII VAQDGSGDYK TVQEAINAVP DFRNATTVIL 
IKNGNYKEKL NLSASKKMVK LIGENPEKTV LTYDDYAQKK NSFGEAMGTS GSSSFYIYGD
GFAAENITFA NSSGPVGQAV AVWIASDQAV FKNCRFLGFQ DTLYTYGRGS RQYYKNCYIE
GTTDFIFGSS TAMFENCILF CKKGGSYLTA ASTPDTTKYG YVFKNCKITG DAPENSFALG
RPWRPYAKTV FINCELGNMI KPAGWDHWGK ESNKQTAYYA EYKNTGPGYK PDKRTDWSQQ
LSDDEAKTYN ITQVFRGWNP VQ