| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_1122 |
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| Symbol | |
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| ID | 8252216 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | + |
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| Start bp | 1309606 |
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| End bp | 1310190 |
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| Gene Length | 585 bp |
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| Protein Length | 194 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 644934773 |
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| Product | RNA polymerase sigma-70 factor |
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| Protein accession | YP_003091402 |
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| Protein GI | 255531030 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.00051341 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGCGGACCG TCAAATCATA CACTGACCAG GAACTGCTTG ATTGTCTAAA ATCAGGGGAC
CAGCAGGCTT TTGCTGAAAT TTATAACAGG TACTGGAAAG TGATGTATTT TCATGCTTTG
AAGATGCTGG GCGATGAAGA TGATGCAAAG GACCTGGCAC AGGAACTTTT TGCTACTTTA
TGGACCAAAG GAACCAATCT TCCCTTTAAC AGCAACCTTT CTGGTTATCT GTATATCACT
GCAAGAAATA AGATCATTAA CCTGATCCAG CAAAAAAAGG TAAGGCGAGA TTATTTAAGT
GCCTTATCTG CGTTTGCTGA AGAGGCAGGT AATGGGACTG TTGAGCAAAT TGACGAAAAG
GAATTGCTGC TGATCGTAGA AAAGGAGATT CAGAATCTGC CTGTTAAAAT GCGCCAGGTT
TTTGAATTGA GCCGAAAACA ATTCTTATCC CATAAAGAAA TTGCAACCCA ACTGGGGATA
TCTGATAAAA CGGTGAAAAA ACAGATCGGA TACGCAATAA GGATGATTAA ACTGAAACTG
GACGTATTGA CAAGGATAAC CATCATATTA TTCTTTTTAA AATAA
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| Protein sequence | MRTVKSYTDQ ELLDCLKSGD QQAFAEIYNR YWKVMYFHAL KMLGDEDDAK DLAQELFATL
WTKGTNLPFN SNLSGYLYIT ARNKIINLIQ QKKVRRDYLS ALSAFAEEAG NGTVEQIDEK
ELLLIVEKEI QNLPVKMRQV FELSRKQFLS HKEIATQLGI SDKTVKKQIG YAIRMIKLKL
DVLTRITIIL FFLK
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