| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_1047 |
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| Symbol | |
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| ID | 8252141 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | - |
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| Start bp | 1231436 |
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| End bp | 1232161 |
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| Gene Length | 726 bp |
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| Protein Length | 241 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 644934700 |
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| Product | LytTr DNA-binding region |
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| Protein accession | YP_003091329 |
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| Protein GI | 255530957 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3279] Response regulator of the LytR/AlgR family |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.791092 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGATCTACA CATGTATTAT AATTGACGAC GAACGCCACT TTACAACATT ACTGGAAGAA
TATATTGCTG AGCTACCTGA ACTGGAACTG ATCAAAACAT TCCACGATCC GACAAGGGCC
ATTGCCGAAC TTACAGCAGA GCACTTTATA GCAGATATCA TTTTCCTGGA CATTCATATG
CCACACATCA GTGGTATTGA ACTTGCACCC CATTTAAAAA AGAAATGCAA ATTCCTGGTA
TTCATTACCG CACACGCACA GTATGCCGTA AATGCCTTTG ATCTGGAAGC CGATGATTTT
TTGTATAAAC CATTTAAAAT AGAAAGACTT CAGCAGTCGA TAAAAAAAAT AACAGGTCAT
ACAACTCCTG CAGTGCAGGA AAATACAGAC AACGATTTTT TCTTTATAAA AATATCAGGT
ACGCAATCTA AATACCTAAA GTTTTTATAC AGTGAGGTCA TTGCATTTGA AAGCGACAAA
AATTACATCA GAATTTATAC CCCAAACGAT TGCTACAGAA TTTATCTGGG CATCAACGAA
GTTGAAAAAA AGCTTGCCGG CCGAAATGAC TTCATAAAAG TACACCGATC CTTTATCATC
TCAAAAGCCT ACATTGAACT GGTAGAGAAC AATATGGTGG TCATGAAAAA CAGCAATGTC
CAGGTTGTCA TCGGAAAGCA GTACAAGGCC TCATTTTTTG CTTATCTGGA AAGTCACAAG
TTTTAA
|
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| Protein sequence | MIYTCIIIDD ERHFTTLLEE YIAELPELEL IKTFHDPTRA IAELTAEHFI ADIIFLDIHM
PHISGIELAP HLKKKCKFLV FITAHAQYAV NAFDLEADDF LYKPFKIERL QQSIKKITGH
TTPAVQENTD NDFFFIKISG TQSKYLKFLY SEVIAFESDK NYIRIYTPND CYRIYLGINE
VEKKLAGRND FIKVHRSFII SKAYIELVEN NMVVMKNSNV QVVIGKQYKA SFFAYLESHK
F
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